PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462865282
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 449aa    MW: 50679.7 Da    PI: 4.8882
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462865282genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.15e-32121022101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++ d++++ ++sw + gnsf+v+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll+ ik
     462865282  12 FLTKTFDLVADPATDGVVSWGRAGNSFIVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQRHLLRLIK 99 
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r++
     462865282 100 RRR 102
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.13E-348101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.4E-598101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-368101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2912101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEGLHEVGPP PFLTKTFDLV ADPATDGVVS WGRAGNSFIV WDPHVFAAVL LPRFFKHNNF  60
SSFVRQLNTY GFRKIDPDRW EFANEGFLRG QRHLLRLIKR RRPPSYHPAS QQQALGTYLE  120
VGHFGGLDEE IDRLKRDKNI LLAEVVKLRQ EQQSTKADMQ AMEERLQHAE SKQLQMMGFL  180
ARAMQNPDFF HQLLQHQDRR RELEDAFSKK RRQGEEELDS AFFFGPEEMA EPGGSELENL  240
AMNIQGLGKR KQQDEKGGGR NNQDDAIAGG ETAELTDDFW EELLSEGMRG EGELSVPEME  300
RRRPPGRHVD ALAQKLSYLS NSTANGVGPV ILRINQIVVL ELDSALFFGP EEMSDPGGSE  360
LENLAMNIQR LGTRKQQDEK GGGRGNQDDA IAGGETAELT DDFWEELLNE GMRGEGELSV  420
PEVERRRPPG RYVDALAQKL SYMSNSTAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-251010118120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195100RLIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462865282
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985605.11e-167heat stress transcription factor A-2d
RefseqXP_006649439.21e-166PREDICTED: heat stress transcription factor A-2d
SwissprotQ8H7Y61e-163HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A1E5WLF61e-172A0A1E5WLF6_9POAL; Heat stress transcription factor A-2d
STRINGSi038907m1e-166(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-99heat shock transcription factor A6B