PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 197aa MW: 21197.9 Da PI: 7.3377

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462864810	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.7	1.3e-40	26	126	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+ rr+Ca+dCv+apyf +++ +++fa vh++FGa +v kll+++p+++r da+sslvyeA+ar+rdPvyG+v+ i++lqqq+e+l+a+lal+++ 462864810 26 PCAACKMYRRRCAEDCVFAPYFTSSKaAQDFADVHRVFGAGRVRKLLQEIPDQHRGDAVSSLVYEANARVRDPVYGCVAAISSLQQQVETLQAQLALAQA 125 7*******************998868*******************************************************************998 PP DUF260 100 e 100 e 462864810 126 E 126 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.198	25	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-39	26	124	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MTETAAVVAD GARAGVQGAG GGRATPCAAC KMYRRRCAED CVFAPYFTSS KAAQDFADVH 60 RVFGAGRVRK LLQEIPDQHR GDAVSSLVYE ANARVRDPVY GCVAAISSLQ QQVETLQAQL 120 ALAQAEMVRL NMNNAYMAHR LKATRGCGGT STNTGSPSSM SSPKTEQPEA HCKATPELLD 180 MVVDQPYSMD DSQLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-39	22	129	7	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-39	22	129	7	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462864810

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982247.1	4e-70	LOB domain-containing protein 4
Swissprot	Q8LBW3	8e-46	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A3L6TSK8	3e-76	A0A3L6TSK8_PANMI; LOB domain-containing protein 4-like
STRING	Pavir.Ib04170.1.p	3e-70	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-40	LOB domain-containing protein 4

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]