PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462864482 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 24970.3 Da PI: 4.6049 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 5.8e-12 | 36 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtae.........eAakaaiaarkkleg 55 s+ +GVr ++ +gr++AeIr p + r++lg+f t+e + a+a++aa++k++g 462864482 36 SRMRGVRKRP-WGRYAAEIRNPI----NkGRVWLGTFATPElhgrttppqGTARAYDAAARKFRG 95 679*******.**********73....349********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.6E-14 | 36 | 104 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.96E-27 | 36 | 105 | No hit | No description |
Pfam | PF00847 | 2.3E-5 | 36 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-23 | 37 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.898 | 37 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 38 | 49 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-21 | 39 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 85 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MALKGSSSSA AGGDGGVIII GGREVVMLDE EEEEKSRMRG VRKRPWGRYA AEIRNPINKG 60 RVWLGTFATP ELHGRTTPPQ GTARAYDAAA RKFRGASAIT NYPEDVPVPT PSKEPSAASN 120 IVVSSTSALS LESPVVVPRD VAPLSLELCL GLPDMVSEEP NVFLDLTIAV NGSTPAPFSQ 180 PSNQLHAMKF VAAFEDVQNN FLSLSSSVVV DAPPPEVNWG LDLSLAPPVE IILVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 34 | 110 | 11 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462864482 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | O80340 | 2e-22 | ERF78_ARATH; Ethylene-responsive transcription factor 4 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11853 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 2e-24 | ethylene responsive element binding factor 4 |