PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462864231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bZIP | ||||||||
Protein Properties | Length: 471aa MW: 51156 Da PI: 6.5226 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.6 | 1.5e-09 | 186 | 226 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka+i++Le +L++ ++L 462864231 186 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQEL 226 7889************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-8 | 182 | 245 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.312 | 184 | 228 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 3.48E-22 | 186 | 238 | No hit | No description |
SuperFamily | SSF57959 | 5.13E-7 | 186 | 229 | No hit | No description |
Pfam | PF00170 | 1.0E-6 | 186 | 226 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.3E-7 | 187 | 230 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 189 | 204 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 6.0E-33 | 268 | 343 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MESRQGGAAA TAAEDAGGAM PSFGPPQHAI HTDVNSMQPS GVTDFGALAQ SAGFRIEDLA 60 NLNTNTFSNL KPSIHTNNND PLQFGSYRKP ISSLHTSTTT AATVASRIDP SSLAQQTGVQ 120 TNLVSVTSGN IENWGESALA AASPMTDTST DPDTDEGNQM QFEQGQLGGP TISDSSDKSR 180 DKLDQKTLRR LAQNREAARK SRLRKKAYIQ NLESSRLKLT QLEQELQRAR QQGIFISSSG 240 DQPQSTSGNG ALAFDMEYAR WLEEHNKHTN ELRAAVNAHA GDNDLRSIVD SIMAHYDEIF 300 KLKGVAAKAD VFHVLSGMWK TPAERCFMWL GGFRSSELLK LLAGQLEPLT DQQLLGISNL 360 QQSSQQAEDA LSQGMEALQQ SLAETLASGS LGPAGSSGNV ANYMGQMAMA MGKLGTLENF 420 LRQADNLRLQ TLQQMQRILT TRQSARALLA ISDYFSRLRA LSSLWHARPR E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00492 | DAP | Transfer from AT5G06950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462864231 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458658.1 | 0.0 | transcription factor TGAL1 | ||||
Swissprot | Q41558 | 0.0 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | C5XMK2 | 0.0 | C5XMK2_SORBI; Uncharacterized protein | ||||
STRING | Sb03g037560.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-151 | bZIP family protein |