PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462863258
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 207aa    MW: 22376.4 Da    PI: 8.4599
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462863258genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1084.6e-3464122260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d++v++i+Y+g Hnh+k
  462863258  64 EDGYNWRKYGQKQVKGSENPRSYYKCTHPSCSMKKKVERSLADGRVTQIVYKGAHNHPK 122
                8********************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-3055123IPR003657WRKY domain
PROSITE profilePS5081127.17558123IPR003657WRKY domain
SuperFamilySSF1182901.05E-2660123IPR003657WRKY domain
SMARTSM007742.4E-3663122IPR003657WRKY domain
PfamPF031061.5E-2564121IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MIAASQQDTK AFSDFSFHNN NNFPSFAAKE EEQQPEVASN KAAPAAAAAV VSSKNSSSSN  60
NKLEDGYNWR KYGQKQVKGS ENPRSYYKCT HPSCSMKKKV ERSLADGRVT QIVYKGAHNH  120
PKPVSTRRNN SGAASAAAAA AEDSSFSAPE HSAGGGATPE NSSGHHPYTL EMLSNNSGYG  180
AFQQQQQQRV TKDEPRDDLF VDSLLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2052123677Probable WRKY transcription factor 4
2lex_A2e-2052123677Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462863258
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0943245e-87FP094324.1 Phyllostachys edulis cDNA clone: bphylf049a05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807559.13e-54WRKY transcription factor WRKY24-like
TrEMBLA0A2S3HDE46e-53A0A2S3HDE4_9POAL; Uncharacterized protein
STRINGPavir.Ca01475.1.p3e-53(Panicum virgatum)
STRINGPavir.J27870.1.p8e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.26e-32WRKY DNA-binding protein 26