PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 168aa MW: 18629.4 Da PI: 12.0219

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462862919	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.9	1e-28	33	87	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+ sYYrCt+++Cpvkk+vers +d vv++tYeg+H+h+ 462862919 33 EDGYRWRKYGQKAVKNSP---SYYRCTTQKCPVKKRVERSFQDAAVVITTYEGKHTHP 87 8************998...8*********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.8E-31	17	89	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-25	24	89	IPR003657	WRKY domain
PROSITE profile	PS50811	26.968	27	89	IPR003657	WRKY domain
SMART	SM00774	5.2E-33	32	88	IPR003657	WRKY domain
Pfam	PF03106	1.1E-21	33	87	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MICRAGKGKG KGEKRPRQPR FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP SYYRCTTQKC 60 PVKKRVERSF QDAAVVITTY EGKHTHPIPA TLRGSAHLLA AAHGLRRIRP ARRRRRIRRA 120 WLLASAAAAA AGPAPRHAAA AADERRGGHH RSAAGGERRH GVEPRGGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-24	23	90	8	78	Probable WRKY transcription factor 4
2lex_A	4e-24	23	90	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	118	RRRRRIRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462862919

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100833	1e-111	FP100833.1 Phyllostachys edulis cDNA clone: bphyem102p01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002440260.1	9e-62	probable WRKY transcription factor 34
Swissprot	Q8VWJ2	2e-45	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	C5YVV8	2e-60	C5YVV8_SORBI; Uncharacterized protein
STRING	Pavir.J10895.1.p	7e-64	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	7e-43	WRKY DNA-binding protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]