PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462862854

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 354aa MW: 38188.8 Da PI: 8.4637

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462862854	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	74	134	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ 462862854 74 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNAA 134 78999*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-32	64	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-32	75	132	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	78	132	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	80	116	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSQLLISSLK TPQDLQYSGS SSSTESDAKG NTHQDNSDPP PQPEVVDAED PKSSLESQQP 60 GDDEANQKEK LKKPDKVLPC PRCNSMDTKF CYFNNYNVNQ PRHFCKNCQR YWTAGGAMRN 120 VPVGAGRRKN KNAASHLKEK VHIPIGSTGS EGSINRNDKT LGGIKEKVTV EKPANGVQHP 180 GTMNGATMWP PYSCAPPQAY YPPGIAIPIY PAVPGYWGCM VPGGWSLPWP VQSPTQGLSS 240 PTTAPSVSSG ADSLTLGKHA REGDEGRSHE SGKVWMPKTI RIDDADEVAK SSILSLIGIK 300 GDKQGTDMDG RKHGTVFELK HDAKTAKQAM ITSSPLLHAN PVALTRSLTF QEGS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSQLLISSLK TPQDLQYSGS SSSTESDAKG NTHQDNSDPP PQPEVVDAED PKSSLESQQP  60
GDDEANQKEK LKKPDKVLPC PRCNSMDTKF CYFNNYNVNQ PRHFCKNCQR YWTAGGAMRN  120
VPVGAGRRKN KNAASHLKEK VHIPIGSTGS EGSINRNDKT LGGIKEKVTV EKPANGVQHP  180
GTMNGATMWP PYSCAPPQAY YPPGIAIPIY PAVPGYWGCM VPGGWSLPWP VQSPTQGLSS  240
PTTAPSVSSG ADSLTLGKHA REGDEGRSHE SGKVWMPKTI RIDDADEVAK SSILSLIGIK  300
GDKQGTDMDG RKHGTVFELK HDAKTAKQAM ITSSPLLHAN PVALTRSLTF QEGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462862854

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956784	9e-87	EU956784.1 Zea mays clone 1573856 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983151.1	1e-161	cyclic dof factor 1
TrEMBL	A0A1D8F0I7	1e-163	A0A1D8F0I7_9POAL; Dof protein
STRING	Si035787m	1e-161	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	4e-56	cycling DOF factor 1