PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462862714
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 708aa    MW: 77576.3 Da    PI: 8.0231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462862714genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH551.5e-17437486255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  462862714 437 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 486
                889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.116132162IPR002885Pentatricopeptide repeat
PfamPF015350.62137163IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.054163197IPR002885Pentatricopeptide repeat
PfamPF015350.017165193IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.841266302IPR002885Pentatricopeptide repeat
PfamPF130412.7E-9266315IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.0E-6269294IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.908303337IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.347338368IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.123371405IPR002885Pentatricopeptide repeat
PfamPF130411.3E-11371410IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-7373406IPR002885Pentatricopeptide repeat
Gene3DG3DSA:4.10.280.101.6E-23432506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-18433503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.78435485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-15437489No hitNo description
PfamPF000105.5E-15437486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12441491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MAPGAGSQWQ PAHIHQLHAH LLVTGRLAGS STVALALLRA ACRVRSSPCL RPLARHLLDG  60
IIHRSPHLLH AAARLATRLR LPSLAFRHYL ALRAHHPSFL PPPAAIADVL KSVPCRAAHA  120
HALRVAAHAL DARFLNNTLI AMYFACGDAL RARQVFEGMC DRDVISWTSL ISGLVQNGFP  180
FQGFHHFMAM IRCEVRPDFV LLVSVIKACM EIDNFPCATA VHSLVVKGGF DNELDVVITL  240
TAMYARFGCI VAARALFDRV PSPQVNVILW NAMISGYSKN GLASEAVDLF KRMRMVARSM  300
TPDSVTLLSV ILACAQLGSI ELAEWMEDYV QGSEYRDDVV VNTALIDMYA KLGNIPRSHA  360
IFQRIHVQDR DVVVWSALIC GYGVHGHVKE AFALFEDMKL TGVQPNDVTF LELTVRVDRK  420
GGSCSDGGTD QRPNTPRSKH SATEQRRRSK INDRFQILRE LLPHSDQKRD KATFLLEVIE  480
YIRFLQEKVN KYEASFPEWN QENAKILPWS KGQIPGDALP DPAQFTRNGS SPGFNFTGKL  540
DDNHNTVTSA AASGAQDQTE TDHVASVSYR SADTTPNITN NVASQCQPQW TGPSPVDECA  600
VNSETLNNQQ LAIDEGTISV SSQYSQELLN SLTQALQSLG IDLSQASISV QINLGKRAAK  660
RPAAGVSSKE PTETQPSSNH ETGHQLTMLG SGAEAPSHAT KRHKPGNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-4210141017320PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462862714
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801922.10.0pentatricopeptide repeat-containing protein At3g12770-like isoform X2
RefseqXP_025801924.10.0pentatricopeptide repeat-containing protein At3g12770-like isoform X4
RefseqXP_025801925.10.0pentatricopeptide repeat-containing protein At3g12770-like isoform X5
TrEMBLA0A0D3H8140.0A0A0D3H814_9ORYZ; Uncharacterized protein
STRINGOBART09G13850.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-63BES1-interacting Myc-like protein 2