PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462862680

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 434aa MW: 46201.3 Da PI: 6.192

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462862680	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	263	311	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq 462862680 263 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 311 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.02E-11	258	315	No hit	No description
SuperFamily	SSF47459	6.41E-17	258	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.65	260	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	261	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-7	263	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-11	266	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MDMNNESNQE KGMESNRTSS GGAGIPVEWQ SQFSAAFPCA PAQQQQAGPM MDSFASAGLW 60 ASTSQAMGLS DVSAMSAARG HGFLAPVPGF LPQGLGNFPV DSGFIERAAR ASCFGGGGGG 120 LMGGNAGYGA ADQPMNNAFS GSSEALLDHQ RKDGNDKAEP DHGRRNDHDE VPSSEAAGGD 180 CSSKGTSDSK KRRRPNEMGA DQVQSSNLPA DSANESVHSK DKGEENSPAT TNGKSKGKGT 240 KETSESQKEE YIHVRARRGQ ATNSHSLAER LRREKISERM KLLQDLVPGC SKVTGKAVML 300 DEIINYVQSL QRQVEFLSMK LATVNPRLDL NIEGLLSKDL LRFPGVSSSS IGFSPEMMHP 360 QLQLSQPGLM HGGAAGMANP DVFRRIIQAQ LSTIDGSQMP HTLNGSFSDV TQMAYPSLGS 420 QDLSMRPSQD GFQM

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MDMNNESNQE KGMESNRTSS GGAGIPVEWQ SQFSAAFPCA PAQQQQAGPM MDSFASAGLW  60
ASTSQAMGLS DVSAMSAARG HGFLAPVPGF LPQGLGNFPV DSGFIERAAR ASCFGGGGGG  120
LMGGNAGYGA ADQPMNNAFS GSSEALLDHQ RKDGNDKAEP DHGRRNDHDE VPSSEAAGGD  180
CSSKGTSDSK KRRRPNEMGA DQVQSSNLPA DSANESVHSK DKGEENSPAT TNGKSKGKGT  240
KETSESQKEE YIHVRARRGQ ATNSHSLAER LRREKISERM KLLQDLVPGC SKVTGKAVML  300
DEIINYVQSL QRQVEFLSMK LATVNPRLDL NIEGLLSKDL LRFPGVSSSS IGFSPEMMHP  360
QLQLSQPGLM HGGAAGMANP DVFRRIIQAQ LSTIDGSQMP HTLNGSFSDV TQMAYPSLGS  420
QDLSMRPSQD GFQM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462862680

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698809.1	0.0	transcription factor bHLH49 isoform X2
Refseq	XP_021308861.1	0.0	transcription factor bHLH49 isoform X1
TrEMBL	K3ZTF2	0.0	K3ZTF2_SETIT; Uncharacterized protein
STRING	Si029882m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	2e-60	bHLH family protein