PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462862308
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 381aa    MW: 42451.4 Da    PI: 4.9663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462862308genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.3e-53541851129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                +ppGfrFhPtdeelv +yL+kkv+++k++l +vi++vd+y++ePwdL+   k+   e+++wyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+v +k +
  462862308  54 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDVDLYRTEPWDLQDhcKIGYeEQSDWYFFSYKDRKYPTGTRTNRATLTGFWKATGRDKAVRDKhG 152
                69****************************.9***************942443332556**************************************966 PP

        NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                + l+g++ktLvfy+grap+g+ktdW++heyrle
  462862308 153 RGLIGMRKTLVFYTGRAPNGRKTDWIIHEYRLE 185
                678****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-5547190IPR003441NAC domain
PROSITE profilePS5100553.12154208IPR003441NAC domain
PfamPF023653.3E-2755184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTMLWSKALW QLSFPADYGQ YAPDLTLDTI IKLQLRAAGG QQASYRTVIM ESCVPPGFRF  60
HPTDEELVGY YLRKKVASQK IDLDVIRDVD LYRTEPWDLQ DHCKIGYEEQ SDWYFFSYKD  120
RKYPTGTRTN RATLTGFWKA TGRDKAVRDK HGRGLIGMRK TLVFYTGRAP NGRKTDWIIH  180
EYRLETDENA TPQASPVDSQ PLFLFAGNGR GRRLGGVPGS IAAGAWDMSY HDSILAGAAQ  240
FKQESLELDA AALLQYSSRL AELPQLESPP PPNQDSLRGG TVDGQGEHDL DARHDTTVSS  300
DWRALDRFVA SQLSPDEERA DRGLPREFDK PAGSNDGDNG DATDIVAMLL LDSVLEKDAG  360
LLGSVASTSA CLPKNDTIYD F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-445118412140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462862308
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750860.0KT075086.1 Panicum virgatum secondary wall NAC master switch (SWN4B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661306.11e-151NAC domain-containing protein 105
RefseqXP_022678690.11e-151NAC domain-containing protein 105
RefseqXP_022678691.11e-151NAC domain-containing protein 105
SwissprotQ9SL417e-92NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A0K1TPD51e-140A0A0K1TPD5_PANVG; Secondary wall NAC master switch
STRINGPavir.Ia02924.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.13e-94vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]