PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462862240

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 234aa MW: 25470.3 Da PI: 5.2441

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462862240	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.7e-06	75	120	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ + RR+ri +++ L+ l+P + +k Ka +L + ++Y++sLq 462862240 75 SAQSKVRRERISERMRVLQALVPGC----DKVTGKALVLDEIINYVQSLQ 120 667799****************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.817	69	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-13	71	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-5	75	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.70E-8	79	124	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.6E-12	82	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MATSSRIQQQ MEHGLTNASY TMSSYLFCHG AGTDSAIPED ASLEASSAVL DTSPQGTASV 60 DKKTKPRDDS CSLNSAQSKV RRERISERMR VLQALVPGCD KVTGKALVLD EIINYVQSLQ 120 NQVEFLSMRI ASLSPVLYGF GMDSDAFNDH TQKIEGMLHH EALAMPGSVL NRAPSHAIMD 180 TNTSTSSASY EVHGDGGISF HQDNGSYMVQ TVGDEPRQEL FNQVVFSNHM GSFQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462862240

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085581	1e-112	BT085581.1 Zea mays full-length cDNA clone ZM_BFc0036H10 mRNA, complete cds.
GenBank	EU962121	1e-112	EU962121.1 Zea mays clone 240361 bHLH transcription factor GBOF-1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803717.1	1e-124	transcription factor bHLH137-like
TrEMBL	A0A2S3H1M2	1e-123	A0A2S3H1M2_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EUH4	1e-123	A0A2T7EUH4_9POAL; Uncharacterized protein
STRING	Pavir.J05063.1.p	1e-122	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2358	37	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	4e-33	bHLH family protein