PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462862207
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 446aa    MW: 46468.9 Da    PI: 9.4739
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462862207genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.18.4e-1095120227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+lC+ +     CkyGd+C+FaHg+
  462862207  95 KTRLCNKYNTAEGCKYGDKCHFAHGE 120
                8***********************96 PP
2zf-CCCH30.18.4e-10245270227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+lC+ +     CkyGd+C+FaHg+
  462862207 245 KTRLCNKYNTAEGCKYGDKCHFAHGE 270
                8***********************96 PP
3zf-CCCH32.21.8e-10412437127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC++f   G C +GdrC+FaHg+
  462862207 412 FKTKLCDNFTN-GSCTFGDRCHFAHGE 437
                69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.923461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8873462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-53563IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-63659IPR000571Zinc finger, CCCH-type
PfamPF146081.44259No hitNo description
SuperFamilySSF902291.83E-892124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-1492125IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-493120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.06193121IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-795120IPR000571Zinc finger, CCCH-type
SMARTSM003228161227IPR004087K Homology domain
PROSITE profilePS500849.372162195IPR004088K Homology domain, type 1
CDDcd001052.40E-4164195No hitNo description
Gene3DG3DSA:3.30.1370.107.6E-5166195IPR004088K Homology domain, type 1
PfamPF146080.53194209No hitNo description
PROSITE profilePS501037.197199212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8242274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-14242275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061243271IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4243270IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-7245270IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.84E-10303387IPR004088K Homology domain, type 1
SMARTSM003221.3E-4311386IPR004087K Homology domain
PROSITE profilePS5008412.622312381IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.8E-10314385IPR004088K Homology domain, type 1
CDDcd001057.41E-9314381No hitNo description
PfamPF000131.6E-7316383IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.2E-14409440IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-8411437IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.568411438IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-8411440IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8412437IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEGDRKRGQA EGANGASAIG KRARESESFQ TGVGRKSKPC TKFFSTSGCP FGDGCHFLHC  60
FPDGYQAVAK MTNLGGSAMA PPQGRMPMGP TPSVKTRLCN KYNTAEGCKY GDKCHFAHGE  120
RELGKPMNGS LPAPMVLRPT GHYAPPPMAS PGMATPASFG SSAIAKISVD ASLAGAIIGR  180
DGVNTKQITR VTGANTSGCP FGDGCHFLHC FPDGYQAVAK MTNLGGSAMA PPQGRMPMGP  240
TPSVKTRLCN KYNTAEGCKY GDKCHFAHGE RELGKPMNGS LPAPMVLRPT GHYAPPPMAS  300
PGMATPASFG SSAIAKISVD ASLAGAIIGR DGVNTKQITR VTGAKGCDTK LAIRDHESDN  360
ILKNIELKGT FDQIKNASAM VRELIVSSGG GAPPPARNPA RGSNRGGPGS NFKTKLCDNF  420
TNGSCTFGDR CHFAHGENEL CKPAAT
Cis-element ? help Back to Top
SourceLink
PlantRegMap462862207
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2423413e-56AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233968.21e-143zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-124C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM8B2441e-150M8B244_AEGTA; Zinc finger CCCH domain-containing protein 14
STRINGEMT107871e-150(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-45C3H family protein