PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462862207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 446aa MW: 46468.9 Da PI: 9.4739 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.1 | 8.4e-10 | 95 | 120 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + CkyGd+C+FaHg+ 462862207 95 KTRLCNKYNTAEGCKYGDKCHFAHGE 120 8***********************96 PP | |||||||
2 | zf-CCCH | 30.1 | 8.4e-10 | 245 | 270 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + CkyGd+C+FaHg+ 462862207 245 KTRLCNKYNTAEGCKYGDKCHFAHGE 270 8***********************96 PP | |||||||
3 | zf-CCCH | 32.2 | 1.8e-10 | 412 | 437 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f G C +GdrC+FaHg+ 462862207 412 FKTKLCDNFTN-GSCTFGDRCHFAHGE 437 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.92 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.887 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.24E-5 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-6 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.4 | 42 | 59 | No hit | No description |
SuperFamily | SSF90229 | 1.83E-8 | 92 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-14 | 92 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-4 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.061 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-7 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 8 | 161 | 227 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 9.372 | 162 | 195 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.40E-4 | 164 | 195 | No hit | No description |
Gene3D | G3DSA:3.30.1370.10 | 7.6E-5 | 166 | 195 | IPR004088 | K Homology domain, type 1 |
Pfam | PF14608 | 0.53 | 194 | 209 | No hit | No description |
PROSITE profile | PS50103 | 7.197 | 199 | 212 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-8 | 242 | 274 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-14 | 242 | 275 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.061 | 243 | 271 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-4 | 243 | 270 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-7 | 245 | 270 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 9.84E-10 | 303 | 387 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.3E-4 | 311 | 386 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 12.622 | 312 | 381 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.8E-10 | 314 | 385 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 7.41E-9 | 314 | 381 | No hit | No description |
Pfam | PF00013 | 1.6E-7 | 316 | 383 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-14 | 409 | 440 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-8 | 411 | 437 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.568 | 411 | 438 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-8 | 411 | 440 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-8 | 412 | 437 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MEGDRKRGQA EGANGASAIG KRARESESFQ TGVGRKSKPC TKFFSTSGCP FGDGCHFLHC 60 FPDGYQAVAK MTNLGGSAMA PPQGRMPMGP TPSVKTRLCN KYNTAEGCKY GDKCHFAHGE 120 RELGKPMNGS LPAPMVLRPT GHYAPPPMAS PGMATPASFG SSAIAKISVD ASLAGAIIGR 180 DGVNTKQITR VTGANTSGCP FGDGCHFLHC FPDGYQAVAK MTNLGGSAMA PPQGRMPMGP 240 TPSVKTRLCN KYNTAEGCKY GDKCHFAHGE RELGKPMNGS LPAPMVLRPT GHYAPPPMAS 300 PGMATPASFG SSAIAKISVD ASLAGAIIGR DGVNTKQITR VTGAKGCDTK LAIRDHESDN 360 ILKNIELKGT FDQIKNASAM VRELIVSSGG GAPPPARNPA RGSNRGGPGS NFKTKLCDNF 420 TNGSCTFGDR CHFAHGENEL CKPAAT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462862207 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242341 | 3e-56 | AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010233968.2 | 1e-143 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 1e-124 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | M8B244 | 1e-150 | M8B244_AEGTA; Zinc finger CCCH domain-containing protein 14 | ||||
STRING | EMT10787 | 1e-150 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-45 | C3H family protein |