PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462861839
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 568aa    MW: 61442.5 Da    PI: 8.3556
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462861839genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-06134156123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cgk F r  nL+ H r H
  462861839 134 FVCEICGKGFQRDQNLQLHRRGH 156
                89*******************88 PP
2zf-C2H212.20.00055283301523
                TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                dCg++Fsr++++++H   +
  462861839 283 DCGTVFSRRDSFVTHRAFC 301
                9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.28E-5133156No hitNo description
SMARTSM003550.012134156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-5134156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.614134156IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SMARTSM00355130177207IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.28E-5207224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MSGADGRDAI GSFPSARNTA REPEEFLQRQ YNVVKPFMGS PPEMGNEDGN LQSVTGSSEP  60
LPAPPAAKKK RSLPGTPVYS LHDARTNELI RPLKPDTNTD TIACMHDGDD GRNEDPSAEV  120
IALSPKTLMA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRGTGKE APRKKVYVCP  180
EASCVHHDPA RALGDLTGIK KHFFRKHGEK KWKCDKCSKK YAASCVHHNP ARALGDLTGI  240
KKHFCRKHGE KKWKCERCAK RYAVHSDWKA HSKVCGTREY KCDCGTVFSR RDSFVTHRAF  300
CDALAQENNK LEQPMNMATV ASALQGQANH HLPLPPHQLG LGDDLDADDD ADDFGLLDTK  360
SPQLRMLPGS DDANQPLQLP PLTMAGCMQL SSLGARSFAS PAFFSGSKMD LDGPSGDPGM  420
GFSSAGSASM SATALLQKAA EMGATTSVYG AVGFTTGGFG PLMLGGPDRL PTMSPFAPVR  480
APFDGLSLGG QTQLVGFDVG GLHPGQLFRS DGAQSVGSMT RAIGSLMHSG QLVDHRRPDD  540
KRVVDYMGVD DHSFNGVAPF GPHMAPWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-31249316370Zinc finger protein JACKDAW
5b3h_F3e-31249316370Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462861839
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569261e-127EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971187.30.0protein indeterminate-domain 2
TrEMBLA0A368RFM80.0A0A368RFM8_SETIT; Uncharacterized protein
STRINGSi001316m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.12e-89C2H2 family protein