PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462861836
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 270aa    MW: 29701.1 Da    PI: 6.5186
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462861836genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB169.53.8e-5322116296
      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ yl+kyre +g+
  462861836  22 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDPMRRYLNKYRERDGD 116
                89*****************************************************************************************9987 PP
2NF-YB173.72e-54127222297
      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ yl+kyre+eg++
  462861836 127 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDPMRRYLNKYREVEGDR 222
                89********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-4918118IPR009072Histone-fold
SuperFamilySSF471133.11E-3724119IPR009072Histone-fold
PfamPF008081.2E-262790IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.5E-175573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.5E-177492No hitNo description
PRINTSPR006154.5E-1793111No hitNo description
Gene3DG3DSA:1.10.20.102.6E-50122228IPR009072Histone-fold
SuperFamilySSF471133.11E-38129227IPR009072Histone-fold
PfamPF008081.2E-26132195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PROSITE patternPS006850163179IPR003956Transcription factor, NFYB/HAP3, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAEHHGQPDG DGRRAGAAEE IKEQDRLLPI ANVGRIMKQI LPPNAKISKE AKETMQECVS  60
EFISFVTGEA SDKCHKEKRK TVNGDDVCWA FGALGFDDYV DPMRRYLNKY RERDGDGRRA  120
GAAEEIKEQD RLLPIANVGR IMKQILPPNA KISKEAKETM QECVSEFISF VTGEASDKCH  180
KEKRKTVNGD DVCWAFGALG FDDYVDPMRR YLNKYREVEG DRAAAAASSR GGADHPGGSS  240
SGAGAGPSGG GHFMFGAMDR SDNNNSSRQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4221217192Transcription factor HapC (Eurofung)
4g92_B8e-4221217192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462861836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880381e-143AB288038.1 Oryza sativa Japonica Group OsHAP3D gene for HAP3 subunit of HAP complex, complete cds.
GenBankAP0032461e-143AP003246.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423A12.
GenBankAP0032661e-143AP003266.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0492G09.
GenBankAP0149571e-143AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-143CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8365731e-143CT836573.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128I01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635864.12e-77nuclear transcription factor Y subunit B-1
RefseqXP_015635872.12e-77nuclear transcription factor Y subunit B-1
SwissprotO822482e-53NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0E0CCP21e-100A0A0E0CCP2_9ORYZ; Uncharacterized protein
STRINGOMERI01G39560.13e-99(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.19e-55nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]