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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462861833 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NF-YB | ||||||||
Protein Properties | Length: 167aa MW: 18639.7 Da PI: 7.4433 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 144.4 | 2.6e-45 | 40 | 132 | 2 | 94 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++qd++lPianv+rimk vlP +akisk aket+qec++ef++fvt+eas++c+re+rktingdd+++a+ +lG+e+y ++++ yl++yre e 462861833 40 SAQDNLLPIANVGRIMKDVLPPQAKISKRAKETIQECATEFVGFVTGEASERCRRERRKTINGDDICHAMRSLGLEHYSDAMRRYLQRYRESE 132 579****************************************************************************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.0E-42 | 40 | 136 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.22E-33 | 42 | 136 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-23 | 46 | 109 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.2E-14 | 73 | 91 | No hit | No description |
PRINTS | PR00615 | 1.2E-14 | 92 | 110 | No hit | No description |
PRINTS | PR00615 | 1.2E-14 | 111 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MSENFNFTSL GQSGSSQLQT LVRASSSAST DHADGGGVNS AQDNLLPIAN VGRIMKDVLP 60 PQAKISKRAK ETIQECATEF VGFVTGEASE RCRRERRKTI NGDDICHAMR SLGLEHYSDA 120 MRRYLQRYRE SEELAAALNS SSGREIQIDV RDELSIFRGN EQRRDRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 9e-38 | 42 | 130 | 4 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 9e-38 | 42 | 130 | 4 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462861833 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003246 | 1e-102 | AP003246.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423A12. | |||
GenBank | AP003266 | 1e-102 | AP003266.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0492G09. | |||
GenBank | AP014957 | 1e-102 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-102 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814482.1 | 8e-85 | transcriptional activator hap3-like | ||||
Swissprot | O04027 | 1e-41 | NFYB4_ARATH; Nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | A0A2T7DBX6 | 1e-86 | A0A2T7DBX6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03969.1.p | 4e-81 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2917 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 1e-42 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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