PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462861665
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 365aa    MW: 40302.5 Da    PI: 8.3339
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462861665genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-06312334223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp+C+k F+++ +L+ H  + H
  462861665 312 VCPKCHKAFRDPVLLVEHVERdH 334
                7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.19E-1356101No hitNo description
PROSITE profilePS510397.65961107IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.9E-1061100IPR000058Zinc finger, AN1-type
SMARTSM001540.00264103IPR000058Zinc finger, AN1-type
PfamPF014282.2E-1364101IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.4E-10142208IPR000058Zinc finger, AN1-type
SuperFamilySSF1183105.49E-9144196No hitNo description
PROSITE profilePS510397.786149196IPR000058Zinc finger, AN1-type
SMARTSM001540.073152193IPR000058Zinc finger, AN1-type
PfamPF014284.9E-8152191IPR000058Zinc finger, AN1-type
SMARTSM003550.071274297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280276297IPR007087Zinc finger, C2H2
SMARTSM003557311334IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764311339IPR007087Zinc finger, C2H2
PROSITE patternPS000280313334IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
LTTEPPPSFC LLPSPVLPPC RCPVPPRQHL AATEAQEAEA VRVSRRRARS GMGTPEFPNL  60
GQHCSVGDCR QIDFLPFTCD RCEHVFCLQH RSYMSHQCPN ANVKDVTVLV CPLCAKGVRL  120
NPNEDPNITW DSHVNTDCDP SNYQKVTKKK KCPVPGCRET LTFSNTIRCK DCTKEHCLKH  180
RFGPDHKCPG PRKMDSSFSF SNMLRKSQKA ETRSNSSKNS SSWWSSSLLN AASNFKTSAE  240
AGMQKLSTAT SQALQKAKDG ISPDSSSSSG DLVEQCIHCP ARFSTVGALI EHVEKSHQTS  300
SQSSRGRVTV DVCPKCHKAF RDPVLLVEHV ERDHGGTYPA IQNSQIHASA NVYQSFCGDC  360
KQELT
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462861665
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460884.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-167SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A3L6QU761e-179A0A3L6QU76_PANMI; AN1-type zinc finger protein 2B
STRINGPavir.J03938.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]