PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462860401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 35520.1 Da PI: 10.5224 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 5.9e-08 | 137 | 162 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+G++C+FaH++ 462860401 137 KTRMCTKYNTAEGCKFGEKCHFAHSE 162 9***********************95 PP | |||||||
2 | zf-CCCH | 36.7 | 7.3e-12 | 305 | 330 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f + GtC +G+rC+FaHg+ 462860401 305 YKTKLCENFVK-GTCTFGERCHFAHGE 330 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.4 | 69 | 96 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.859 | 69 | 97 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-5 | 70 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-6 | 71 | 94 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.55 | 77 | 94 | No hit | No description |
SMART | SM00356 | 0.27 | 135 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.338 | 135 | 163 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-7 | 135 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-12 | 137 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-4 | 137 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.1370.10 | 4.1E-14 | 204 | 274 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.2E-10 | 204 | 274 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.739 | 205 | 269 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 7.6E-14 | 206 | 300 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.4E-10 | 207 | 269 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.50E-13 | 207 | 269 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-15 | 303 | 334 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-9 | 303 | 334 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-8 | 304 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.272 | 304 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 305 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
PDPLLRNLFS SADRRPKSRA RVPARLFQTR GPAMEGAAAR KRSRPETANG GSAGGKRSKD 60 TESFQTGLSS KSKPCTKFFS TIGCPFGEGC HFSHFIPGGY PAVAKMLNLG SPTVSAPSRA 120 PVDHAAVANS HPASTGKTRM CTKYNTAEGC KFGEKCHFAH SERELGKPAY MSHHEGPPMG 180 GRFGGRPEPR QPSAMGPPAG SFGASATAKI SVDASLAGGI IGKGGVNTKQ ISRVTGVKLS 240 IRDHESDPNL KNIELEGNFD QIKQASNMVG ELIATISANM PVKNPSGPTA PVGRGGGGSG 300 GRSNYKTKLC ENFVKGTCTF GERCHFAHGE SEQRRGPV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462860401 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447282.1 | 0.0 | zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q7XPK1 | 1e-157 | C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31 | ||||
TrEMBL | C5Y9Z9 | 1e-179 | C5Y9Z9_SORBI; Uncharacterized protein | ||||
STRING | Sb06g032000.1 | 1e-180 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-50 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|