PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462860401
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 338aa    MW: 35520.1 Da    PI: 10.5224
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462860401genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.9e-08137162227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+ C  +     Ck+G++C+FaH++
  462860401 137 KTRMCTKYNTAEGCKFGEKCHFAHSE 162
                9***********************95 PP
2zf-CCCH36.77.3e-12305330127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+lC +f + GtC +G+rC+FaHg+
  462860401 305 YKTKLCENFVK-GTCTFGERCHFAHGE 330
                9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.46996IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8596997IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-57094IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-67194IPR000571Zinc finger, CCCH-type
PfamPF146080.557794No hitNo description
SMARTSM003560.27135162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338135163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7135166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-12137167IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4137162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.104.1E-14204274IPR004088K Homology domain, type 1
SMARTSM003221.2E-10204274IPR004087K Homology domain
PROSITE profilePS5008414.739205269IPR004088K Homology domain, type 1
SuperFamilySSF547917.6E-14206300IPR004088K Homology domain, type 1
PfamPF000132.4E-10207269IPR004088K Homology domain, type 1
CDDcd001051.50E-13207269No hitNo description
Gene3DG3DSA:4.10.1000.109.4E-15303334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-9303334IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-8304330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.272304331IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9305330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
PDPLLRNLFS SADRRPKSRA RVPARLFQTR GPAMEGAAAR KRSRPETANG GSAGGKRSKD  60
TESFQTGLSS KSKPCTKFFS TIGCPFGEGC HFSHFIPGGY PAVAKMLNLG SPTVSAPSRA  120
PVDHAAVANS HPASTGKTRM CTKYNTAEGC KFGEKCHFAH SERELGKPAY MSHHEGPPMG  180
GRFGGRPEPR QPSAMGPPAG SFGASATAKI SVDASLAGGI IGKGGVNTKQ ISRVTGVKLS  240
IRDHESDPNL KNIELEGNFD QIKQASNMVG ELIATISANM PVKNPSGPTA PVGRGGGGSG  300
GRSNYKTKLC ENFVKGTCTF GERCHFAHGE SEQRRGPV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462860401
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447282.10.0zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-157C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLC5Y9Z91e-179C5Y9Z9_SORBI; Uncharacterized protein
STRINGSb06g032000.11e-180(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-50C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]