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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462860323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 145aa MW: 15665.9 Da PI: 8.5115 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.7 | 1.4e-13 | 10 | 48 | 1 | 43 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAa 43 ++y+GVr ++ +gr++AeIrdp + r+r++lg+f++ae a 462860323 10 PRYRGVRKRP-WGRFAAEIRDPAK---RARVWLGTFDSAEADA 48 68********.**********843...6**********77655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.8E-9 | 10 | 46 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.82E-16 | 10 | 49 | No hit | No description |
PROSITE profile | PS51032 | 16.436 | 11 | 49 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-18 | 11 | 49 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-11 | 11 | 48 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-13 | 11 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-9 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-9 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MCDTAAVAAP RYRGVRKRPW GRFAAEIRDP AKRARVWLGT FDSAEADARX XXPPPAPAQA 60 PTPRRASAGR RPDLQLQLHR RRVALPRPAA VPDAGCHSDC ASSASVVDDG DDASTVRSRA 120 SFDLNLPAPV DGDDLDLCTE LRLCL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462860323 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958014 | 2e-60 | EU958014.1 Zea mays clone 1640422 ethylene-responsive transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148189.2 | 4e-42 | uncharacterized protein LOC100281797 | ||||
TrEMBL | A0A0A9P7I7 | 7e-45 | A0A0A9P7I7_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ga00187.1.p | 3e-43 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 2e-18 | ethylene response factor 7 |