PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859763
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 300aa    MW: 32892.4 Da    PI: 4.1777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859763genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-183380152
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
               + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  462859763 33 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 80
               57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-123380IPR001471AP2/ERF domain
CDDcd000182.99E-213392No hitNo description
PROSITE profilePS5103223.0243491IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-213491IPR016177DNA-binding domain
SMARTSM003805.2E-363497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-313493IPR001471AP2/ERF domain
PRINTSPR003674.6E-103546IPR001471AP2/ERF domain
PRINTSPR003674.6E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MPPEYDITRP ATSPPAEGVE KRGKGGGGSG RHPSYRGVRM RAWGKWVSEI REPRKKSRIW  60
LGTFPTPEMA ARAHDAAALV VKGPTAVLNF PEMAASLPRP ASSSPRDVQA AAARAAAMHD  120
HDHVVGATMP AAPPEQRQAS SFDDDNEELE EIVELPQVDE DLTGDLMFRT SFHDSATEPW  180
YEQQSWTLAG IAAHDEMIVP GLEQDHLWTQ PADGTRQASP FDDDSEELEE IVELPPIDED  240
FAGELMFQDS AAEPWYEQAW TLAGIAAHDE MIVPGLEPDH LWTQPDGTAS SDLGAILWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-172491372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859763
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745752e-90EU974575.1 Zea mays clone 453357 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193635.12e-56ethylene-responsive transcription factor ERF039-like
SwissprotQ9LYD32e-47DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A453SEK13e-55A0A453SEK1_AEGTS; Uncharacterized protein
STRINGMLOC_17203.12e-55(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]