PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462859763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 300aa MW: 32892.4 Da PI: 4.1777 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.9e-18 | 33 | 80 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ 462859763 33 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 80 57*****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-12 | 33 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.99E-21 | 33 | 92 | No hit | No description |
PROSITE profile | PS51032 | 23.024 | 34 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-21 | 34 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.2E-36 | 34 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-31 | 34 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MPPEYDITRP ATSPPAEGVE KRGKGGGGSG RHPSYRGVRM RAWGKWVSEI REPRKKSRIW 60 LGTFPTPEMA ARAHDAAALV VKGPTAVLNF PEMAASLPRP ASSSPRDVQA AAARAAAMHD 120 HDHVVGATMP AAPPEQRQAS SFDDDNEELE EIVELPQVDE DLTGDLMFRT SFHDSATEPW 180 YEQQSWTLAG IAAHDEMIVP GLEQDHLWTQ PADGTRQASP FDDDSEELEE IVELPPIDED 240 FAGELMFQDS AAEPWYEQAW TLAGIAAHDE MIVPGLEPDH LWTQPDGTAS SDLGAILWSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 24 | 91 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462859763 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974575 | 2e-90 | EU974575.1 Zea mays clone 453357 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193635.1 | 2e-56 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9LYD3 | 2e-47 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A453SEK1 | 3e-55 | A0A453SEK1_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_17203.1 | 2e-55 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 8e-27 | ERF family protein |
Publications ? help Back to Top | |||
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