PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462859171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 243aa MW: 26986.1 Da PI: 10.2466 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.6e-06 | 215 | 239 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ C+ksF ++ L+ H ++ H 462859171 215 YVCKSCSKSFYSPVALEIHRKLkkH 239 9******************997555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.741 | 215 | 243 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 217 | 239 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MGLREKHWGV VVKPGETLKC DPGEFYCAVS QIALEGGKGN ENVEVFVKVN GNILLMATLS 60 AFRHPQYATE LVFEKEFELL HTSKTRNVSV IGYRFSNDDE SKEAKICSEK LAAPRRAAVQ 120 SSKPKVTLEK RLNPGKLNVA CRSDDGENAK GKNRLVETPL KTPMEKKAKK TTSFTGKNIS 180 RAPVVQVKER DHVHVATPYP SEQVKRSPFS ISPSYVCKSC SKSFYSPVAL EIHRKLKKHG 240 AGK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462859171 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021305986.1 | 9e-62 | histone deacetylase HDT2 isoform X2 | ||||
TrEMBL | A0A0A9GI37 | 5e-74 | A0A0A9GI37_ARUDO; Uncharacterized protein | ||||
STRING | Si002175m | 6e-53 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11173 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03740.1 | 2e-17 | histone deacetylase 2C |