PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462859112 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 187aa MW: 20807.8 Da PI: 9.5309 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.6 | 2.7e-07 | 17 | 38 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r H 462859112 17 FCQVCGKGFKRDANLRMHMRAH 38 6*******************99 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.0003 | 106 | 129 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C++C+ k+Fs s+L++H + + 462859112 106 YVCNNCNsKHFSVLSDLRTHEKHC 129 9*******************9876 PP | |||||||
3 | zf-C2H2 | 12 | 0.00065 | 138 | 152 | 6 | 20 |
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L+ H+ 462859112 138 CGTSFSRKDKLVGHL 152 **************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.29E-6 | 15 | 40 | No hit | No description |
PROSITE profile | PS50157 | 12.487 | 16 | 43 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 16 | 38 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.0E-7 | 18 | 66 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 68 | 101 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 21 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MIIELDAAEL LAMYTHFCQV CGKGFKRDAN LRMHMRAHGD EYKTSAALQA NPGPANGGSS 60 SSTNKPYYSC PEEGCRWNRK HAKFQPLKSV ICAKNHYKRS HCPKMYVCNN CNSKHFSVLS 120 DLRTHEKHCG VQRWLCSCGT SFSRKDKLVG HLALFAGDGH QPAVPLDSTN ARNAAKRWSA 180 PAQQLGI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462859112 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063290 | 2e-89 | AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence. | |||
GenBank | AP004587 | 2e-89 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. | |||
GenBank | AP005544 | 2e-89 | AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01. | |||
GenBank | AP014964 | 2e-89 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 2e-89 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822509.1 | 5e-93 | LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like | ||||
Swissprot | Q0WT24 | 4e-83 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | J3MVD0 | 5e-95 | J3MVD0_ORYBR; Uncharacterized protein | ||||
STRING | OB08G30610.1 | 9e-96 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7441 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 2e-82 | C2H2 family protein |