PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462858457
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 990aa    MW: 111257 Da    PI: 7.0151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462858457genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.7e-141221952697
                T.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  26 h.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                +       +++ +     +l++ +g+ W v l  + + gr++lt+GW +Fv++n L+eg+f+v k   + + +++v vf
  462858457 122 IpeesrriSEN-TMAASAQLKNAEGKAWPVAL--EETNGRVFLTTGWPKFVEDNCLREGEFLVVKS--EANLHFMVLVF 195
                45444443222.3445799*************..*******************************3..34444466555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1585197IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-5102198IPR003340B3 DNA binding domain
CDDcd100175.00E-13112195No hitNo description
SuperFamilySSF1019361.69E-15112202IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-11115194IPR003340B3 DNA binding domain
PROSITE profilePS5086312.576122198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MESHPRFCAA LPFGAPAEVC LRPHLLPSFT HQRPLKTRAE KSEGVEADRK EAFCIAHSVM  60
EEARMPRFFK VLVGDFARRI VSCILSSSSS SSWLGSGVHC CKVAIFGPAE PLEIPQAFLC  120
HIPEESRRIS ENTMAASAQL KNAEGKAWPV ALEETNGRVF LTTGWPKFVE DNCLREGEFL  180
VVKSEANLHF MVLVFGVNAV ERSVWSSRGA TCNLDGKLPC DIFPSRRGNS GDQSTEMPAS  240
ITHGHSQTVT LQSTQRDDHI SSHDELGTCF SCKWPMEDDK AKAIAKVMRT FDMDRLTVEL  300
FCATLGLYKW NVDTAAEEFD VCKGKQQISP ELSLKKKLIL HGKTAHNISF CCSVSFVKEQ  360
LQHFFPLDDN SCAPMHERWK NKLDMLNLSN QSLPCDLTPA KRKLVDKHES CDLSHQQKRG  420
VGKLQRGSPH TDTPRRSLRL ARLKNTSDWT NNTLKERSEI LEPSLTRENQ VKDRADKSCL  480
LYEKHDCVLK GVHEEVIGSL SQDFRKFQPM HNQIESGEKQ TERSALLTSE TFMSTGSTET  540
WSLPTNSKLT SDSRITELSV TWKSSQQGNP LENILLDIER DNFMNTIAHI QKIIRDELPD  600
LQTADIIENI VRTGIPKWDL CLRDSNAQKI VNVVLEHAKK VKERNKFNID VRKEEFSVKL  660
QDRSKWQLKE METGYTSLEL DYKKATADAS ICFLKLEEHR KTLCAIEDGI KDLQQDMMTK  720
EDELQKLRHQ VSEHETMYQK LIMEKVKVKM ALKSYHKTLD EVKRSLSSDE PSSIDVEALV  780
KVEMDNACKE IELSKGIIIS INIMKDRCAT TIVVLPDIIR SRASCTTCSD CASSALVASS  840
SSSIAGFRII ALAIAILCFC PPESWINILY MRIHNTFEAS DERVTCEFCG ETDFLSSTSN  900
TEATAFAPFA RSDVMLPASA ISFPVLTRTK KVLKTSPADI SPDCASFPPY QKSSAHVKNE  960
RQGDNPVVIP ATQDFFLAFF NGSSCAHSKS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462858457
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3660394e-91AK366039.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039P13.
GenBankY100994e-91Y10099.1 H.vulgare mRNA for novel P-glycoprotein homologue.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816069.10.0B3 domain-containing protein Os03g0120900-like
TrEMBLA0A2T7DHD30.0A0A2T7DHD3_9POAL; Uncharacterized protein
STRINGSi005032m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-09B3 family protein