PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

462858183

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 526aa MW: 54975.8 Da PI: 6.6744

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462858183	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	53.4	7.5e-17	76	141	1	65
DUF260 1 aCaaCkvlrrkCakdCvlapyfpa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 +CaaC++lrr C+++C +ap+fp ++p++fa+v+ FG++ ++ l+ ++e++++a+++lv +A 462858183 76 PCAACQHLRRPCPPNCDFAPHFPPgDDPARFAAVNMAFGTEYFIEHLRIRSPEQHTEAVNALVRQA 141 7*******************88477*********************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.074	75	176	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-15	76	142	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
VPEGGGVEGD VVVRDREGGG AAVRGVPASP AAGVRPHGEV RRRARGVRRR RRRPEPPPPE 60 SGPAADGGRA TAAEPPCAAC QHLRRPCPPN CDFAPHFPPG DDPARFAAVN MAFGTEYFIE 120 HLRIRSPEQH TEAVNALVRQ AVEVVNVVIR ALLEANREDE RLRLAAVALR QLNARYREEA 180 ASARFVPEVV AARHDRVQAA TEQVPAGDSL AGVTNFETPM DQKWADGVIG ALPEADVPGS 240 RTGVTAAFPE PAATVPAFLM QQPPPQAPTA AGGLPDLNSS TVMGNSAPWT TGKLAARDFA 300 AAVSLAEASA IGAKHAVIDK VRKAQAAATE GGGQGGSDQR DAPAAILVAG VLPLDQAIDA 360 GIAGARCGVA IMVQHLGPLS LFSSPSVLTV LQNGSAAAVA ASVRARADLS VQEVSDELMT 420 NILVIDLEIM ADAAAMGARS ECFNLAWMHI LPIPVNRWAD ILTIVVGACV AAALTGCRRL 480 LNTDEDWIAL VLHGGLVLIV TVLAVGVFSV SNARPVSRRM WVTKPL

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

VPEGGGVEGD VVVRDREGGG AAVRGVPASP AAGVRPHGEV RRRARGVRRR RRRPEPPPPE  60
SGPAADGGRA TAAEPPCAAC QHLRRPCPPN CDFAPHFPPG DDPARFAAVN MAFGTEYFIE  120
HLRIRSPEQH TEAVNALVRQ AVEVVNVVIR ALLEANREDE RLRLAAVALR QLNARYREEA  180
ASARFVPEVV AARHDRVQAA TEQVPAGDSL AGVTNFETPM DQKWADGVIG ALPEADVPGS  240
RTGVTAAFPE PAATVPAFLM QQPPPQAPTA AGGLPDLNSS TVMGNSAPWT TGKLAARDFA  300
AAVSLAEASA IGAKHAVIDK VRKAQAAATE GGGQGGSDQR DAPAAILVAG VLPLDQAIDA  360
GIAGARCGVA IMVQHLGPLS LFSSPSVLTV LQNGSAAAVA ASVRARADLS VQEVSDELMT  420
NILVIDLEIM ADAAAMGARS ECFNLAWMHI LPIPVNRWAD ILTIVVGACV AAALTGCRRL  480
LNTDEDWIAL VLHGGLVLIV TVLAVGVFSV SNARPVSRRM WVTKPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	44	52	RGVRRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462858183

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-14	LOB domain-containing protein 25