PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 301aa MW: 32431.6 Da PI: 7.1343

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462858153	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.7	2e-32	171	228	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s +prsYYrCt a+C vkk vers++dp+ v++tYeg+H+h+ 462858153 171 EDGYRWRKYGQKAVKNSSYPRSYYRCTAARCGVKKLVERSQQDPSSVITTYEGQHTHP 228 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-33	157	230	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-28	162	230	IPR003657	WRKY domain
PROSITE profile	PS50811	30.446	165	230	IPR003657	WRKY domain
SMART	SM00774	3.3E-37	170	229	IPR003657	WRKY domain
Pfam	PF03106	5.1E-26	171	228	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSGPAAAAAA AGEGGLHGDP TAGFFNPFDH HDDVDSFFLR RSPGIPGEGG DGLAAYSSSI 60 TDYLQGFLQD DDGVVKQEMV VQAAVSGHDD RLPGASATPN SSSSGAVCGE ETRRRCKKGT 120 PEEEEEENDD EDEEGSAADR SCKKRSKGEK KKKERLPRVA FMTKSEVDHL EDGYRWRKYG 180 QKAVKNSSYP RSYYRCTAAR CGVKKLVERS QQDPSSVITT YEGQHTHPSP VGLGGRVARL 240 PAIADDAAAA PRLHAEQLTA FWQWHSASDD APSSAGAPHF VAAGGCVRRR AGPRRPAHKH 300 R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-26	161	230	8	77	Probable WRKY transcription factor 4
2lex_A	4e-26	161	230	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462858153

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU058607	3e-83	KU058607.1 UNVERIFIED: Panicum miliaceum WRKY7-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961086.1	4e-67	probable WRKY transcription factor 57
Swissprot	Q8VWJ2	1e-42	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	K3Z7P8	1e-65	K3Z7P8_SETIT; Uncharacterized protein
STRING	Si022568m	2e-66	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	5e-41	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]