PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462857710
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 302aa    MW: 32784 Da    PI: 11.3164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462857710genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12104147452
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ eY++
  462857710 104 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLEYMN 147
                78999********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.466100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16100167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-16103169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-10104147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-12106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-4115154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLAVISAASS SSSPSSPPPH HRERRWPRRS GTTTAFRAYS AALAPRRQPS GGAPGQRMIK  60
MGISILRRLH MLRLSRERDA GAAVVQRGGQ DDELAAAPSS SQLNHMISER RRRERLNESF  120
EALRGLLPPG SKKDKATVLA KTLEYMNILV AQISDLEARN RTLESRAHQR ANGGSKELMY  180
HSSSEQRQAV LRQGPSCSSE RVQVHVMSDG ASTSSSSSSS GRQEVTVRVE ARAEGDVAEL  240
VTRVLAAIRK TGRFTVVAVD ARRPSSEGII AQATFTLRAT AGEFDEVSLK EVVMKAAEDS  300
AT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462857710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679086.11e-116putative transcription factor bHLH041 isoform X2
TrEMBLA0A368PH991e-113A0A368PH99_SETIT; Uncharacterized protein
STRINGSi019540m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-22bHLH family protein