PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462856946 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | SBP | ||||||||
Protein Properties | Length: 621aa MW: 67729.9 Da PI: 6.3897 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 112.9 | 1.9e-35 | 125 | 200 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+ e+k yhrrh+vC +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k 462856946 125 RCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILVDFDEDKRSCRRKLERHNKRRRRK 200 6************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-27 | 121 | 187 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.615 | 123 | 200 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-33 | 124 | 203 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.9E-27 | 126 | 200 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MSVQMDPADA AGGGVDAGEP VWDWGNLLDF VVQDDDALVL PWDDAAGIGA ADPTEAGASL 60 LATPPPQPVE VEDVAAELLA GARKKPKTAG RRGKAGAAGP AGGGRVAAAS GGAGGTGGAA 120 AVEMRCQVPG CEADIRELKG YHRRHRVCLR CAHAAAVMLD GVQKRYCQQC GKFHILVDFD 180 EDKRSCRRKL ERHNKRRRRK PGSKGPFEKE MDEHFDLSAD ISGDGELREE NIEGTTSEML 240 ETVLSSKFLD TETPVGSEDV LSSPTCTEPT LQNEQSKSIV TFAASVEACI GAKQENVKLN 300 SSPVHDTKSA YSSSCPTGRI SFKLYDWNPA EFPRRLRHQI FEWLASMPVE LEGYIRPGCT 360 ILTVFIAMPQ HMWDKLSDDA ANLLRNLVNS PTSLLLGKGT FFIHTDNMIF QVLKDGVTLM 420 STRIEMQAPR IHYVHPTWFE AGKPVELHLC GSSLDHPKFR SLVSFDGDYL KHDCFRLASL 480 DAFDCVEKGD LTLDSQHEIF RISISRSRSD THGPAFVENT GPCGDNYLQS TSAACEEEVT 540 VPLMTKDASH RQCCHPEINA RWLKPSLVIT FPGGATRMRL LTTVVVAAVL CFTACVVLFH 600 PHRAGVLAAP VKRYLSRDSA S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 4e-38 | 125 | 205 | 5 | 85 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 200 | KRSCRRKLERHNKRRRRKP |
2 | 186 | 198 | RRKLERHNKRRRR |
3 | 193 | 200 | NKRRRRKP |
4 | 194 | 199 | KRRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462856946 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805456.1 | 0.0 | squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q6I576 | 0.0 | SPL9_ORYSJ; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A2T8KJS3 | 0.0 | A0A2T8KJS3_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G109354_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6922 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.2 | 1e-108 | squamosa promoter binding protein-like 7 |
Publications ? help Back to Top | |||
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