PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462856669 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 24397.6 Da PI: 9.1886 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.5e-20 | 90 | 141 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 s+++GVr+++ +g+W+AeIrdp + r +lg+f+tae+Aa+a++ a+ +++g+ 462856669 90 SKFRGVRRRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEDAARAYDVAAVEFRGH 141 79********.**********7.....338*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-12 | 90 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-23 | 90 | 149 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.85E-31 | 90 | 148 | No hit | No description |
PROSITE profile | PS51032 | 25.014 | 91 | 148 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-35 | 91 | 154 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-31 | 91 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVPRLESGGF MLPNAEQENS LFLRALISVV SGDTTVPTLE LPETKPLFFG AAAATTESSS 60 DDSEEGESGN LVITGGVGKR GRKRRTKRVS KFRGVRRRPW GKWAAEIRDP HRAVRKWLGT 120 FDTAEDAARA YDVAAVEFRG HRAKLNFPAD AAAVSASSWA TVLQPKPVPE SLREKCGSNA 180 ASPVHMAQVL AGQQGSRTVA KDQEIWDGLN EIMMLDDGSF WSMP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-20 | 91 | 150 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 98 | RRTKRVSKFRGVRRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462856669 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974975 | 5e-78 | EU974975.1 Zea mays clone 461977 ethylene-responsive element binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806850.1 | 7e-91 | ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A2S3GTV8 | 2e-89 | A0A2S3GTV8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7FCK7 | 2e-89 | A0A2T7FCK7_9POAL; Uncharacterized protein | ||||
STRING | Si018144m | 2e-86 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 4e-21 | ERF family protein |