PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462856669
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 224aa    MW: 24397.6 Da    PI: 9.1886
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462856669genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.5e-2090141156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                s+++GVr+++ +g+W+AeIrdp     +   r +lg+f+tae+Aa+a++ a+ +++g+
  462856669  90 SKFRGVRRRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEDAARAYDVAAVEFRGH 141
                79********.**********7.....338*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1290141IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2390149IPR016177DNA-binding domain
CDDcd000181.85E-3190148No hitNo description
PROSITE profilePS5103225.01491148IPR001471AP2/ERF domain
SMARTSM003802.5E-3591154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3191149IPR001471AP2/ERF domain
PRINTSPR003671.0E-1092103IPR001471AP2/ERF domain
PRINTSPR003671.0E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVPRLESGGF MLPNAEQENS LFLRALISVV SGDTTVPTLE LPETKPLFFG AAAATTESSS  60
DDSEEGESGN LVITGGVGKR GRKRRTKRVS KFRGVRRRPW GKWAAEIRDP HRAVRKWLGT  120
FDTAEDAARA YDVAAVEFRG HRAKLNFPAD AAAVSASSWA TVLQPKPVPE SLREKCGSNA  180
ASPVHMAQVL AGQQGSRTVA KDQEIWDGLN EIMMLDDGSF WSMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-20911501474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18398RRTKRVSKFRGVRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462856669
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749755e-78EU974975.1 Zea mays clone 461977 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806850.17e-91ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2S3GTV82e-89A0A2S3GTV8_9POAL; Uncharacterized protein
TrEMBLA0A2T7FCK72e-89A0A2T7FCK7_9POAL; Uncharacterized protein
STRINGSi018144m2e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-21ERF family protein