PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 237aa MW: 25026.8 Da PI: 5.5776

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462856576	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	7.1e-38	15	74	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+s+ntkfCyynnys+sqPr+fCkaCrryWt+GG+lrnv vGgg+rk k+ss 462856576 15 EEALKCPRCESSNTKFCYYNNYSVSQPRFFCKACRRYWTQGGSLRNVSVGGGSRKYKRSS 74 6899***************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-20	4	61	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	16	72	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.643	18	72	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	20	56	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MAVGGEERMP RPHLEEALKC PRCESSNTKF CYYNNYSVSQ PRFFCKACRR YWTQGGSLRN 60 VSVGGGSRKY KRSSASSSST PPSSSSVTEV INNQNLVPAS LTGFPNVLPT FMSTSSFEIP 120 HFSLPIAPTL SLSGLAPTPM LAPIAATPTT SSFLELLGGS LLDNQGNDFY GPMITDGGNE 180 MEVLPPPSSF DFGVMQQHGV IGAHHDGTPI TGATEGGQWP TANNGDDGAA GSEGGQQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462856576

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190796.1	2e-50	dof zinc finger protein DOF3.2-like
Swissprot	O24463	1e-44	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	A0A453KF57	4e-49	A0A453KF57_AEGTS; Uncharacterized protein
TrEMBL	M8C8J4	7e-49	M8C8J4_AEGTA; Dof zinc finger protein PBF
STRING	EMT30398	1e-49	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-27	Dof family protein

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]