PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462856573

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 350aa MW: 37332.6 Da PI: 5.8732

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462856573	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.4	1.4e-37	124	183	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+s+ntkfCyynnys+sqPr+fCkaCrryWt+GG+lrnv vGgg+rk k+ss 462856573 124 EEALKCPRCESSNTKFCYYNNYSVSQPRFFCKACRRYWTQGGSLRNVSVGGGSRKYKRSS 183 6899***************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-21	121	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-32	125	181	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.643	127	181	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	129	165	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MARLGAGLAR AAARDGCDDV GGPQLLPRRR APHPTPHRDD VAWVGRGGGA GAERDEGGRG 60 DLDDDCLLPR GREDADMVFR WRFRFLGHDA IGTAAPVEEA RKARRQQQPM AVGGEERMPR 120 PHLEEALKCP RCESSNTKFC YYNNYSVSQP RFFCKACRRY WTQGGSLRNV SVGGGSRKYK 180 RSSASSSSTP PSSSSVTEVI NNQNLVPASL TGFPNVLPTF MSTSSFEIPH FSLPIAPTLS 240 LSGLAPTPML APIAATPTTS SFLELLGGSL LDNQGNDFYG PMITDGGNEM EVLPPPSSFD 300 FGVMQQHGVI GAHHDGTPIT GATEGGQWPT ANNGDDGAAG SEGGLEMEEV

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MARLGAGLAR AAARDGCDDV GGPQLLPRRR APHPTPHRDD VAWVGRGGGA GAERDEGGRG  60
DLDDDCLLPR GREDADMVFR WRFRFLGHDA IGTAAPVEEA RKARRQQQPM AVGGEERMPR  120
PHLEEALKCP RCESSNTKFC YYNNYSVSQP RFFCKACRRY WTQGGSLRNV SVGGGSRKYK  180
RSSASSSSTP PSSSSVTEVI NNQNLVPASL TGFPNVLPTF MSTSSFEIPH FSLPIAPTLS  240
LSGLAPTPML APIAATPTTS SFLELLGGSL LDNQGNDFYG PMITDGGNEM EVLPPPSSFD  300
FGVMQQHGVI GAHHDGTPIT GATEGGQWPT ANNGDDGAAG SEGGLEMEEV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462856573

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-26	Dof family protein