PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462856208
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 579aa    MW: 63602.6 Da    PI: 6.3403
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462856208genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.8e-202681156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +++ +++t++q++eLe++F+++++p+ ++r++L+++lgL+  q+k+WFqN+R+++k
  462856208 26 KKRYHRHTQHQIQELEAFFKQHPHPDDKQRKQLSRELGLEPLQIKFWFQNKRTQMK 81
               688999***********************************************999 PP
2START186.41.5e-581653991206
                HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
      START   1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                ela +a++elv++a+++ep+Wv  +       e +n++e+ ++f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW + +     +a+tlev
  462856208 165 ELAVAAMEELVRMAQLGEPLWVPAVaddgvaaEALNEEEYARSFPRGVGpkspeLRSEASRETVVVIMNHMSLVEMLMDVN-QWWTLFStivsRASTLEV 263
                57899***************************************99777********************************.88777777777******* PP

                ECTT................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
      START  85 issg................galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                +s+g                  + +m+ae+q++splvp R++ fvRy++q+ +g+w+ vdvS+d  +      s  R++++pSg++i++++ng+s+vtwv
  462856208 264 LSTGvagnyngalqinqteeLSVLQMSAEFQMPSPLVPtRESQFVRYCKQHADGSWAGVDVSLDGLRGGA---SPPRGRRRPSGCVIRELPNGYSRVTWV 360
                ******************9999**********************************************87...567899********************* PP

                E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                eh++ ++ ++h+l+r+l +sgl +ga++w a+l+rqce+
  462856208 361 EHAEADDGMVHELYRPLASSGLSFGARRWAAALERQCER 399
                *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-24967IPR009057Homeodomain-like
SuperFamilySSF466893.3E-201684IPR009057Homeodomain-like
PROSITE profilePS5007117.4752383IPR001356Homeobox domain
SMARTSM003891.3E-192487IPR001356Homeobox domain
CDDcd000861.65E-182684No hitNo description
PfamPF000468.0E-182681IPR001356Homeobox domain
PROSITE patternPS0002705881IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.607.7E-468111IPR009057Homeodomain-like
PROSITE profilePS5084838.178156402IPR002913START domain
CDDcd088756.26E-115160398No hitNo description
SuperFamilySSF559613.97E-29160399No hitNo description
SMARTSM002342.7E-52165399IPR002913START domain
PfamPF018524.8E-49166399IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-4284363IPR023393START-like domain
SuperFamilySSF559611.95E-8405520No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MEGGGGSGSA GEELQEEDLS EQRPRKKRYH RHTQHQIQEL EAFFKQHPHP DDKQRKQLSR  60
ELGLEPLQIK FWFQNKRTQM KTQQERHENS HLRAENEKLR AENARFRDAL ANATCPSCGG  120
PATAAIGEMS FDEQQLRLEN ARLRDEIDRI SSIAAKYVGK PLVIELAVAA MEELVRMAQL  180
GEPLWVPAVA DDGVAAEALN EEEYARSFPR GVGPKSPELR SEASRETVVV IMNHMSLVEM  240
LMDVNQWWTL FSTIVSRAST LEVLSTGVAG NYNGALQINQ TEELSVLQMS AEFQMPSPLV  300
PTRESQFVRY CKQHADGSWA GVDVSLDGLR GGASPPRGRR RPSGCVIREL PNGYSRVTWV  360
EHAEADDGMV HELYRPLASS GLSFGARRWA AALERQCERL LTSAEGRRSM LRLAERMVAS  420
FCVGVTASTT HQWTTLSGSG AEDVRVTTRK SVDDPGRPPG IILNAATSFW LPPSPSRIFG  480
FLRDDATRSE WDILSNGGDV REMAHIANGR DQGNAVSLLR VNILVDSAPT AKLSLGSVAT  540
VNSLIACTVE RIKAAVAADK PAGAAPPAAW PIGDQADAS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462856208
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819913.10.0homeobox-leucine zipper protein ROC7-like
SwissprotA3BPF20.0ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBLA0A2T7D3450.0A0A2T7D345_9POAL; Uncharacterized protein
STRINGSi013279m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2