PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 181aa MW: 19448.9 Da PI: 10.6027

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462855850	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4.2e-20	57	111	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +f++eq++ Le++F+ + ++ +++ +LA+ lgL+ rqV +WFqNrRa++k 462855850 57 RNKKRFSEEQIKSLESMFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNRRARWK 111 67789*************************************************9 PP
2	HD-ZIP_I/II	126	1.7e-40	58	149	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+eq+k+LE++F +++kLep++K +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L +++++L++e+++ 462855850 58 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALLAHNKKLHAEIMA 149 79*************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.57E-20	39	115	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.8E-21	52	113	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.637	53	113	IPR001356	Homeobox domain
SMART	SM00389	4.2E-17	56	117	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-17	57	111	IPR001356	Homeobox domain
CDD	cd00086	2.09E-14	57	114	No hit	No description
PRINTS	PR00031	6.2E-6	84	93	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.2E-6	93	109	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.4E-13	113	152	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MRSGTFRSSS SSSHRPLASR GSEVVLSAMM EGDEDGPEWM MDVGGPGGGK GKGGVDRNKK 60 RFSEEQIKSL ESMFATQTKL EPRQKLQLAR DLGLQPRQVA IWFQNRRARW KTKQLEKDYD 120 ALRRQLDAAR AENDALLAHN KKLHAEIMAL KGGGGGGGGA GAGGGGSGGR QEAASELINL 180 N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	113	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462855850

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087258	4e-81	BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001339824.1	2e-53	homeobox-leucine zipper protein HOX23
Swissprot	A2Z734	4e-48	HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
Swissprot	Q94GL5	4e-48	HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBL	A0A060D8B1	6e-52	A0A060D8B1_MAIZE; HB transcription factor (Fragment)
STRING	GRMZM5G803812_P01	9e-53	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	8e-35	homeobox 3

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]