PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462853784
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family BES1
Protein Properties Length: 832aa    MW: 94622 Da    PI: 4.8731
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462853784genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822905.8e-28112829136
     DUF822  29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl............eeaeaagssasaspesslq.sslkssalaspvesysaspk 115
                ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r +++ l               +  g++  a + +++  ++l+s+a+ +p++s++++++
  462853784   1 MLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRSSTQVLplllllswsselFCFAYDGTFYPAPVDTPSLtNTLNSYAIGTPLDSQASVLH 100
                79****************************************9999765566653211111122334554455555544599****************** PP

     DUF822 116 sssfpspssldsislasa.......asl 136
                +++++spsslds+ +a++        ++
  462853784 101 TDDSLSPSSLDSVVVAEQsiknenyGNS 128
                ***************9986655444222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.5E-271137IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.32E-75155355IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.8E-83155354IPR013781Glycoside hydrolase, catalytic domain
PfamPF013738.1E-43178355IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.8E-23193207IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.8E-23214232IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.8E-23236257IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.8E-23329351IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.807.3E-81355545IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514451.14E-73356553IPR017853Glycoside hydrolase superfamily
PfamPF013731.6E-43366552IPR001554Glycoside hydrolase, family 14
PfamPF013731.5E-46553767IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.802.3E-91553758IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514451.93E-93554831IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.3E-5759830IPR013781Glycoside hydrolase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FRSSTQVLPL LLLLSWSSEL  60
FCFAYDGTFY PAPVDTPSLT NTLNSYAIGT PLDSQASVLH TDDSLSPSSL DSVVVAEQSI  120
KNENYGNSSS VNSLNCMESD QLMRSSAVLA DDYTRTPYIP VYASLRIGII NSHCQLVDPE  180
SVRAELRHLK SLNVDGVIVD CWWGIVEAWT PRKYEWSGYR DLFGIIKEFK LKVQVVLSFH  240
GSGETGSGDV LISLPKWIME IGQENQDIFF TDREGRRNTE YLSWGIDKER VLCGRTGIEV  300
YFDFMRSFHM EFRNLTEEGL IFAIEIGMGA SGELRYPSIP ERMGWRYPGI GEFQIGIINS  360
HCQLVDPESV RAELRHLKSL NVDGVIVDCW WGVVEAWTPR KYEWSGYRDL FGIIKEFKLK  420
VQVVLSFHGS GETGSGDVLI SLPKWIMEIG QENQDIFFTD REGRRNTEYL SWGIDKERVL  480
CGRTGIEVYF DFMRSFHMEF RNLTEEGLIF AIEIGMGASG ELRYPSIPER MGWRYPGIGE  540
FQTNECSSTN VFKVVLSFHG SGETGSGDVL ISLPKWIMEI GQENQDIFFT DREGRRNTEY  600
LSWGIDKERV LCGRTGIEVY FDFMRSFHME FRNLTEEGLI FAIEIGMGAS GELRYPSIPE  660
RMGWRYPGIG EFQCYDRYMQ KNLRQSALTR GHLYWARGPD NAGYYNSRPH ETGFFCDGGD  720
YDSYYGRFFL NWYSGVLIDH VDPVLSLATL AFDGAKIVVK VMNAAWDHGL SLCIESVLPC  780
LDGDMYSQIL NTAKPRNDPD RHYASFFAYR QQPPFISQRD VYFSELSSLV KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A5e-6115876611301BETA-AMYLASE
1q6c_A5e-6115876611301beta-amylase
1q6d_A4e-6115876611301beta-amylase
1q6g_A4e-6115876611301beta-amylase
1uko_A5e-6115876611301Beta-amylase
1uko_B5e-6115876611301Beta-amylase
1uko_C5e-6115876611301Beta-amylase
1uko_D5e-6115876611301Beta-amylase
1ukp_A5e-6115876611301Beta-amylase
1ukp_B5e-6115876611301Beta-amylase
1ukp_C5e-6115876611301Beta-amylase
1ukp_D5e-6115876611301Beta-amylase
1v3i_A4e-6115876611301Beta-amylase
1wdp_A5e-6115876611301Beta-amylase
1wdq_A5e-6115876611301Beta-amylase
1wdr_A5e-6115876611301Beta-amylase
1wds_A5e-6115876611301Beta-amylase
2dqx_A4e-6115876611301Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462853784
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200491e-35AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
GenBankAP0048861e-35AP004886.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0576F08.
GenBankAP0149581e-35AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149126.10.0beta-amylase 8-like isoform X1
RefseqXP_020149127.10.0beta-amylase 8-like isoform X2
SwissprotQ9FH801e-131BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0A9CU130.0A0A0A9CU13_ARUDO; Beta-amylase
STRINGPavir.Aa03184.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.21e-124beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]