PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462853784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | BES1 | ||||||||
Protein Properties | Length: 832aa MW: 94622 Da PI: 4.8731 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 90 | 5.8e-28 | 1 | 128 | 29 | 136 |
DUF822 29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl............eeaeaagssasaspesslq.sslkssalaspvesysaspk 115 ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r +++ l + g++ a + +++ ++l+s+a+ +p++s++++++ 462853784 1 MLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRSSTQVLplllllswsselFCFAYDGTFYPAPVDTPSLtNTLNSYAIGTPLDSQASVLH 100 79****************************************9999765566653211111122334554455555544599****************** PP DUF822 116 sssfpspssldsislasa.......asl 136 +++++spsslds+ +a++ ++ 462853784 101 TDDSLSPSSLDSVVVAEQsiknenyGNS 128 ***************9986655444222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.5E-27 | 1 | 137 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 2.32E-75 | 155 | 355 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.8E-83 | 155 | 354 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 8.1E-43 | 178 | 355 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.8E-23 | 193 | 207 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.8E-23 | 214 | 232 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.8E-23 | 236 | 257 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.8E-23 | 329 | 351 | IPR001554 | Glycoside hydrolase, family 14 |
Gene3D | G3DSA:3.20.20.80 | 7.3E-81 | 355 | 545 | IPR013781 | Glycoside hydrolase, catalytic domain |
SuperFamily | SSF51445 | 1.14E-73 | 356 | 553 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF01373 | 1.6E-43 | 366 | 552 | IPR001554 | Glycoside hydrolase, family 14 |
Pfam | PF01373 | 1.5E-46 | 553 | 767 | IPR001554 | Glycoside hydrolase, family 14 |
Gene3D | G3DSA:3.20.20.80 | 2.3E-91 | 553 | 758 | IPR013781 | Glycoside hydrolase, catalytic domain |
SuperFamily | SSF51445 | 1.93E-93 | 554 | 831 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.3E-5 | 759 | 830 | IPR013781 | Glycoside hydrolase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 832 aa Download sequence Send to blast |
MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FRSSTQVLPL LLLLSWSSEL 60 FCFAYDGTFY PAPVDTPSLT NTLNSYAIGT PLDSQASVLH TDDSLSPSSL DSVVVAEQSI 120 KNENYGNSSS VNSLNCMESD QLMRSSAVLA DDYTRTPYIP VYASLRIGII NSHCQLVDPE 180 SVRAELRHLK SLNVDGVIVD CWWGIVEAWT PRKYEWSGYR DLFGIIKEFK LKVQVVLSFH 240 GSGETGSGDV LISLPKWIME IGQENQDIFF TDREGRRNTE YLSWGIDKER VLCGRTGIEV 300 YFDFMRSFHM EFRNLTEEGL IFAIEIGMGA SGELRYPSIP ERMGWRYPGI GEFQIGIINS 360 HCQLVDPESV RAELRHLKSL NVDGVIVDCW WGVVEAWTPR KYEWSGYRDL FGIIKEFKLK 420 VQVVLSFHGS GETGSGDVLI SLPKWIMEIG QENQDIFFTD REGRRNTEYL SWGIDKERVL 480 CGRTGIEVYF DFMRSFHMEF RNLTEEGLIF AIEIGMGASG ELRYPSIPER MGWRYPGIGE 540 FQTNECSSTN VFKVVLSFHG SGETGSGDVL ISLPKWIMEI GQENQDIFFT DREGRRNTEY 600 LSWGIDKERV LCGRTGIEVY FDFMRSFHME FRNLTEEGLI FAIEIGMGAS GELRYPSIPE 660 RMGWRYPGIG EFQCYDRYMQ KNLRQSALTR GHLYWARGPD NAGYYNSRPH ETGFFCDGGD 720 YDSYYGRFFL NWYSGVLIDH VDPVLSLATL AFDGAKIVVK VMNAAWDHGL SLCIESVLPC 780 LDGDMYSQIL NTAKPRNDPD RHYASFFAYR QQPPFISQRD VYFSELSSLV KT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1bfn_A | 5e-61 | 158 | 766 | 11 | 301 | BETA-AMYLASE |
1q6c_A | 5e-61 | 158 | 766 | 11 | 301 | beta-amylase |
1q6d_A | 4e-61 | 158 | 766 | 11 | 301 | beta-amylase |
1q6g_A | 4e-61 | 158 | 766 | 11 | 301 | beta-amylase |
1uko_A | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1uko_B | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1uko_C | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1uko_D | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1ukp_A | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1ukp_B | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1ukp_C | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1ukp_D | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1v3i_A | 4e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1wdp_A | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1wdq_A | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1wdr_A | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
1wds_A | 5e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
2dqx_A | 4e-61 | 158 | 766 | 11 | 301 | Beta-amylase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462853784 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120049 | 1e-35 | AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence. | |||
GenBank | AP004886 | 1e-35 | AP004886.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0576F08. | |||
GenBank | AP014958 | 1e-35 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149126.1 | 0.0 | beta-amylase 8-like isoform X1 | ||||
Refseq | XP_020149127.1 | 0.0 | beta-amylase 8-like isoform X2 | ||||
Swissprot | Q9FH80 | 1e-131 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A0A9CU13 | 0.0 | A0A0A9CU13_ARUDO; Beta-amylase | ||||
STRING | Pavir.Aa03184.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2141 | 36 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.2 | 1e-124 | beta-amylase 2 |
Publications ? help Back to Top | |||
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