PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462853387

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 294aa MW: 32254.7 Da PI: 6.233

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462853387	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	4e-11	163	207	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ 462853387 163 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRV 207 8999*********************************99998666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.9E-14	159	223	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.76	161	217	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.0E-10	163	213	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.2E-14	163	217	No hit	No description
SuperFamily	SSF57959	1.55E-11	163	217	No hit	No description
CDD	cd14703	8.02E-25	164	214	No hit	No description
PROSITE pattern	PS00036	0	166	181	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MAQLPPKVPT MAPAWPEFGG GHHHQRSPSM GAFLAAPMPP LPPHHQQQPS WVDEFLDFSA 60 AKRGAHRRTV SDSVAFLDDN ASAGAHDFDR LDDDQLLSMF ADDLTPQPAP QQQQQQQAGS 120 SSSPSDHNSY NDEKPEKGET EEAQSECNGD GANAAAPAPV DPKRVKRILA NRQSAQRSRV 180 RKLQYISELE RSVTSLQTEV SALSPRVAFL DHQRSLLTLG NSHLKQRIAA LAQDKIFKDA 240 HQEALKKEIE RLRQIYHQQS LENAESPTTD APPIRGDKDL IPSGEGTPAP CPPS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462853387

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269\|PubMed:18065552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061266	1e-169	BT061266.1 Zea mays full-length cDNA clone ZM_BFb0128B20 mRNA, complete cds.
GenBank	KJ727557	1e-169	KJ727557.1 Zea mays clone pUT5417 bZIP transcription factor (bZIP117) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817786.1	1e-143	basic leucine zipper 2-like
Swissprot	Q5QNI5	1e-105	BZP02_ORYSJ; Basic leucine zipper 2
TrEMBL	A0A0A9EHT6	1e-142	A0A0A9EHT6_ARUDO; Uncharacterized protein
STRING	Pavir.J05339.1.p	1e-143	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	2e-89	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]