PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462853387 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 294aa MW: 32254.7 Da PI: 6.233 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.7 | 4e-11 | 163 | 207 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ 462853387 163 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRV 207 8999*********************************99998666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.9E-14 | 159 | 223 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.76 | 161 | 217 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.0E-10 | 163 | 213 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.2E-14 | 163 | 217 | No hit | No description |
SuperFamily | SSF57959 | 1.55E-11 | 163 | 217 | No hit | No description |
CDD | cd14703 | 8.02E-25 | 164 | 214 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 166 | 181 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MAQLPPKVPT MAPAWPEFGG GHHHQRSPSM GAFLAAPMPP LPPHHQQQPS WVDEFLDFSA 60 AKRGAHRRTV SDSVAFLDDN ASAGAHDFDR LDDDQLLSMF ADDLTPQPAP QQQQQQQAGS 120 SSSPSDHNSY NDEKPEKGET EEAQSECNGD GANAAAPAPV DPKRVKRILA NRQSAQRSRV 180 RKLQYISELE RSVTSLQTEV SALSPRVAFL DHQRSLLTLG NSHLKQRIAA LAQDKIFKDA 240 HQEALKKEIE RLRQIYHQQS LENAESPTTD APPIRGDKDL IPSGEGTPAP CPPS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462853387 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269|PubMed:18065552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT061266 | 1e-169 | BT061266.1 Zea mays full-length cDNA clone ZM_BFb0128B20 mRNA, complete cds. | |||
GenBank | KJ727557 | 1e-169 | KJ727557.1 Zea mays clone pUT5417 bZIP transcription factor (bZIP117) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817786.1 | 1e-143 | basic leucine zipper 2-like | ||||
Swissprot | Q5QNI5 | 1e-105 | BZP02_ORYSJ; Basic leucine zipper 2 | ||||
TrEMBL | A0A0A9EHT6 | 1e-142 | A0A0A9EHT6_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J05339.1.p | 1e-143 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1322 | 38 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58120.1 | 2e-89 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|