PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

TALE

Protein Properties

Length: 736aa MW: 82291.8 Da PI: 6.2404

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462852836	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.2	6.7e-09	473	510	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + 462852836 473 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 510 664559******************************88 PP
2	BELL	118.4	3.2e-38	265	336	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akL+ +l+eVd++Yk+y++q+q v++sF++vag g+akpYt++Al++iSrhFrcLkdai +qi 462852836 265 EKQELQNKVAKLMAMLDEVDRKYKHYYHQMQLVVASFDMVAGSGAAKPYTAVALQTISRHFRCLKDAINDQI 336 689*******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-54	189	334	IPR006563	POX domain
Pfam	PF07526	3.3E-50	195	332	IPR006563	POX domain
Gene3D	G3DSA:1.10.10.60	6.8E-4	382	412	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.357	451	514	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.5E-28	453	523	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-9	454	518	IPR001356	Homeobox domain
CDD	cd00086	5.88E-12	454	515	No hit	No description
SuperFamily	SSF46689	3.85E-17	455	520	IPR009057	Homeodomain-like
Pfam	PF05920	1.2E-17	471	510	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MATYYSSPGS ERDSQTMYSA ESGDVSYPMP SALGNMLYPN NASAGPYTEF SGIIQHQQNF 60 MELSGHPSSV PHDSSSKEST NMVTSLAEQR SFGPLKDVRN EMLMHLMDGA QSSGSNLIHN 120 DSHNSVQLDF GMLNNHNSTS VPSAPGQGLS LSLNTHILAP SYPYWSVKPD LLAPHSYQGD 180 DDRIKNMQSE ASQAIRNSRY LKAAQELLDE IVSVWKSVKR KEDKGHAEVG KADVKETEGG 240 TNSEGVSSNP QESGANAAAE LSTAEKQELQ NKVAKLMAML DEVDRKYKHY YHQMQLVVAS 300 FDMVAGSGAA KPYTAVALQT ISRHFRCLKD AINDQISIIR KKLGEEDNTS GKEGRLTRLR 360 YIDQQLRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLHPII RKKLGEEENT 420 SGKEGRLTRL RYIDQQLRQQ RAFQQYGMLQ QNAWRPQRGL PENSVSILRA WLFEHFLHPY 480 PKDSEKLMLA RQTGLTRSQI SNWFINARVR LWKPMIEDMY KEEIGEAELD SNSSSDNVSR 540 SKIKVPSFDE KEDLKSSTSQ PCQTSQLGES KANISMMSLS GPPACFNNEA NPDDSFMNLM 600 LKDQRPGEMD GSLLHDAVAH HSDDSARFMA YHLAELGRYG NNTVSLTLGL QHAENSLSVP 660 NTQQTFASVG HEDIYNVTAP LSGAPASSDY ESTNQIDQEQ RITCPVKHGI VVLVAIGTEE 720 EGCDSLFPKS EQETKR

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MATYYSSPGS ERDSQTMYSA ESGDVSYPMP SALGNMLYPN NASAGPYTEF SGIIQHQQNF  60
MELSGHPSSV PHDSSSKEST NMVTSLAEQR SFGPLKDVRN EMLMHLMDGA QSSGSNLIHN  120
DSHNSVQLDF GMLNNHNSTS VPSAPGQGLS LSLNTHILAP SYPYWSVKPD LLAPHSYQGD  180
DDRIKNMQSE ASQAIRNSRY LKAAQELLDE IVSVWKSVKR KEDKGHAEVG KADVKETEGG  240
TNSEGVSSNP QESGANAAAE LSTAEKQELQ NKVAKLMAML DEVDRKYKHY YHQMQLVVAS  300
FDMVAGSGAA KPYTAVALQT ISRHFRCLKD AINDQISIIR KKLGEEDNTS GKEGRLTRLR  360
YIDQQLRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLHPII RKKLGEEENT  420
SGKEGRLTRL RYIDQQLRQQ RAFQQYGMLQ QNAWRPQRGL PENSVSILRA WLFEHFLHPY  480
PKDSEKLMLA RQTGLTRSQI SNWFINARVR LWKPMIEDMY KEEIGEAELD SNSSSDNVSR  540
SKIKVPSFDE KEDLKSSTSQ PCQTSQLGES KANISMMSLS GPPACFNNEA NPDDSFMNLM  600
LKDQRPGEMD GSLLHDAVAH HSDDSARFMA YHLAELGRYG NNTVSLTLGL QHAENSLSVP  660
NTQQTFASVG HEDIYNVTAP LSGAPASSDY ESTNQIDQEQ RITCPVKHGI VVLVAIGTEE  720
EGCDSLFPKS EQETKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	7e-16	460	517	5	62	Homeobox protein Meis2
3k2a_B	7e-16	460	517	5	62	Homeobox protein Meis2
4xrs_A	5e-16	460	517	1	58	Homeobox protein Meis1
4xrs_B	5e-16	460	517	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462852836

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792966.1	0.0	BEL1-like homeodomain protein 7
Refseq	XP_025792967.1	0.0	BEL1-like homeodomain protein 7
Swissprot	Q9SIW1	3e-75	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A2T7C2M0	0.0	A0A2T7C2M0_9POAL; Uncharacterized protein
STRING	Si034602m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP901	38	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	2e-71	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]