PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462852833 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TALE | ||||||||
Protein Properties | Length: 359aa MW: 39259.1 Da PI: 6.3558 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.4 | 2.4e-08 | 297 | 329 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yps +e+ +LA ++gL+ q+++WF N R + 462852833 297 HPYPSDSEKLKLAVSTGLSRGQISNWFINARVR 329 79*****************************88 PP | |||||||
2 | BELL | 40.9 | 5.2e-14 | 157 | 226 | 10 | 71 |
BELL 10 akLlslleeVdkrYkqyv........eqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 akLl ll e++ r ++y +l v+ssFe + g +a+ Ytsl ++a++rhF +L+ ai + 462852833 157 AKLLGLLSELESRQERYFgelgrvafSELGRVASSFEPALGPRAAAAYTSLMSQAMARHFGNLRRAILRR 226 89*********9999998222222224556789**********************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.6E-6 | 94 | 225 | IPR006563 | POX domain |
Pfam | PF07526 | 1.8E-18 | 99 | 223 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.953 | 270 | 333 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-8 | 273 | 337 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-16 | 284 | 341 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-23 | 285 | 339 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.62E-11 | 286 | 334 | No hit | No description |
Pfam | PF05920 | 1.2E-16 | 290 | 329 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MSLLFGQLNM VMSKHHEKGS PKQAPRAPVP GNSGDRSWQP PLQFEQCGHC NEQGCQAPGA 60 AAPLVLTLGP LGSAADRPCH RCSCGVAPGP APTPETVSML RGSRFLRPAQ ELLNEAVRMA 120 DVAGGGTGDD GEEAEEQERL EAGAHRAAKD DGDGVQAKLL GLLSELESRQ ERYFGELGRV 180 AFSELGRVAS SFEPALGPRA AAAYTSLMSQ AMARHFGNLR RAILRRLRLH AAAAARRRPA 240 PPLWESFPRA DGDVDDEDDD DEPVTDEKVD RVARRMKXXX XXXXXVLRAW LVKHFLHPYP 300 SDSEKLKLAV STGLSRGQIS NWFINARVRL WKPMIEEMYN DEFSEDHPLS NDTSGASSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 8e-15 | 286 | 337 | 12 | 63 | Homeobox protein Meis2 |
4xrm_B | 8e-15 | 286 | 337 | 12 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462852833 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY082396 | 2e-56 | AY082396.1 Zea mays knotted1-interacting protein (kip) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792968.1 | 3e-85 | BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A2T7C2N2 | 1e-85 | A0A2T7C2N2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia00979.1.p | 8e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75410.2 | 5e-31 | BEL1-like homeodomain 3 |