PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462852071
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 573aa    MW: 63735.5 Da    PI: 9.2427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462852071genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.1e-06379403226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +  C +f+  G C +G+ CkFaH+
  462852071 379 SRNVCFDFLNKGKCERGPECKFAHS 403
                56678889999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.347345373IPR000571Zinc finger, CCCH-type
SMARTSM003560.97345372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5349369IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4377404IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6377405IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868378405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5381404IPR000571Zinc finger, CCCH-type
PfamPF046765.7E-15487570IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MAATLTAPPR ILLAGDAHGR LHQLFKRVNS VLSLSLSLSY WCRLSVTPYG EPVDGAIPRA  60
ALRHCVGQFF SPDGDAEGDI EGRASVPIPT YFTGDYGPAA PRLLSKAAAT ARGFSPEGIE  120
ICPNLFWLRG SNRFTLHAYS PAAPRLLSRA AAAARGFSPS GIEICPSLFW LRGSNRLTLH  180
GLSLVYLSGK KGTGGPGCYS QDEVDALRAL AEERRFIVLM NGQPEWPMGL ILPICLVRYH  240
IAGTKGVFYS RDPYVNDSAA HVARFIGLAN VGNKEKQKFI HAISRTPAST MPSADIHARP  300
PNATLSPYVT PVNSVPNEEA TKHPAENNDV QYWRYDVKRQ RQGNAERGRL CFKFTSSGSC  360
PRGSKCNFRR DEEAMEHYSR NVCFDFLNKG KCERGPECKF AHSLSGESAA KDARPRSERR  420
RVESSCWFCL SSPDRRNLGD IRMLWVSTLR SKVWQVFTLS GFRSSPAMLT FRLGFEFSVV  480
DPDGNATQGR ESLRSQFESK SSLFYVELPE GIILLHKIDG IKKFPAQFGR EALAGLLSMA  540
DRADWRNCKL SKEEEFQMVD DFKRGFREFD PAE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462852071
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307898.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ69NK81e-178C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A1B6QC640.0A0A1B6QC64_SORBI; Uncharacterized protein
STRINGSb02g023040.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10173912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]