PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462852071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 573aa MW: 63735.5 Da PI: 9.2427 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4.1e-06 | 379 | 403 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + C +f+ G C +G+ CkFaH+ 462852071 379 SRNVCFDFLNKGKCERGPECKFAHS 403 56678889999*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.347 | 345 | 373 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.97 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 349 | 369 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-4 | 377 | 404 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-6 | 377 | 405 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.868 | 378 | 405 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 381 | 404 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF04676 | 5.7E-15 | 487 | 570 | IPR006767 | Cwf19-like protein, C-terminal domain-2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MAATLTAPPR ILLAGDAHGR LHQLFKRVNS VLSLSLSLSY WCRLSVTPYG EPVDGAIPRA 60 ALRHCVGQFF SPDGDAEGDI EGRASVPIPT YFTGDYGPAA PRLLSKAAAT ARGFSPEGIE 120 ICPNLFWLRG SNRFTLHAYS PAAPRLLSRA AAAARGFSPS GIEICPSLFW LRGSNRLTLH 180 GLSLVYLSGK KGTGGPGCYS QDEVDALRAL AEERRFIVLM NGQPEWPMGL ILPICLVRYH 240 IAGTKGVFYS RDPYVNDSAA HVARFIGLAN VGNKEKQKFI HAISRTPAST MPSADIHARP 300 PNATLSPYVT PVNSVPNEEA TKHPAENNDV QYWRYDVKRQ RQGNAERGRL CFKFTSSGSC 360 PRGSKCNFRR DEEAMEHYSR NVCFDFLNKG KCERGPECKF AHSLSGESAA KDARPRSERR 420 RVESSCWFCL SSPDRRNLGD IRMLWVSTLR SKVWQVFTLS GFRSSPAMLT FRLGFEFSVV 480 DPDGNATQGR ESLRSQFESK SSLFYVELPE GIILLHKIDG IKKFPAQFGR EALAGLLSMA 540 DRADWRNCKL SKEEEFQMVD DFKRGFREFD PAE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462852071 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307898.1 | 0.0 | zinc finger CCCH domain-containing protein 59 | ||||
Swissprot | Q69NK8 | 1e-178 | C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59 | ||||
TrEMBL | A0A1B6QC64 | 0.0 | A0A1B6QC64_SORBI; Uncharacterized protein | ||||
STRING | Sb02g023040.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10173 | 9 | 12 |
Publications ? help Back to Top | |||
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