PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462852065
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 742aa    MW: 81919.7 Da    PI: 6.9058
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462852065genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.3e-06353377226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +  C +f+  G C +G+ CkFaH+
  462852065 353 SRNVCFDFLNKGKCERGPECKFAHD 377
                56678889999*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073805.69E-3212245No hitNo description
SMARTSM003561.4E-4319346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718319347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6321350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-7323347IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4351378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5351379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178352379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5355378IPR000571Zinc finger, CCCH-type
PfamPF046771.3E-30390491IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541975.48E-8398488IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.101.1E-5399488IPR011146HIT-like domain
SMARTSM003562.7459506IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.864479507IPR000571Zinc finger, CCCH-type
PfamPF046771.4E-35518635IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541973.59E-8526616IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.102.6E-6527630IPR011146HIT-like domain
PfamPF046762.8E-15660739IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MAPTPPAPPR ILLAGDVHGR LHQLFKRVKS VRTSLLSRAP PPPPLPLSQS TGPFHALLCV  60
GQFFSPDADA DGDVADYIEG RAAVPIPTYF TGDYGPAAPR LLSKAAAAAR GFSPDGIEIC  120
PNLFWLRGSN RFTLHGLSVV YLSGKKEPGG PGCYSQDDVD ALRALAEEPD CTNEWPAGVV  180
NGADTSNVPN QVLDPHGYDP VVAELVAEIK PRYHIAGTKG VFYSREPYLN DSAAHVTRFI  240
GLANVGNKEK QKFIHAISPT PASTMSSADI NARPPNGTLS PYIAPVKSVP SEEATKRPAE  300
NNDAQYWRYD VKRQRQGEAE ESRLCFKFTS TGSCPRGSKC HFRHDEEAME HYSRNVCFDF  360
LNKGKCERGP ECKFAHDLSG ESAAKDARPR SERRRVESSC WFCLSSPDVE SHLVISIGEG  420
YYCALAKGPL VPNHVLMIPV EHCPNTLMMA PEAEAELGRY KNALGKYFEK QGNTAVYFEW  480
VSQQTRHANL QGKCERGPEC KFAHDLSGES AAKDARPRSE RRRVESSCWF CLSSPDVESH  540
LVISIGEGYY CALAKGPLVP NHVLMIPVEH CPNTLMMAPE AEAELGRYKN ALGKYFEKQG  600
NTAVYFEWVS QQTRHANLQA VPVPSSKADA VKKIFHLAAK RLGFEFSVVN PDGDATQGRE  660
LLRSQCEGKS SLFYVELPEG RILLHKIDGT EKFPAQFGRE VLAGLLSMAD RADWRNCKLS  720
KEEEIQMVDD FKRGFCEFDP AE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462852065
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307898.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A1B6QC640.0A0A1B6QC64_SORBI; Uncharacterized protein
STRINGGRMZM2G306935_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10173912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]