PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462851434
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 280aa    MW: 30188.4 Da    PI: 4.6643
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462851434genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.76.3e-2584135959
                EEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   9 KYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                KYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ +Hnh 
  462851434  84 KYGQKPIKGSPYPRGYYRCSSNkGCPARKQVERSRADPTVLLVTYTFDHNHA 135
                9********************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.70477137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-2484137IPR003657WRKY domain
SuperFamilySSF1182903.01E-2084137IPR003657WRKY domain
SMARTSM007745.0E-2684136IPR003657WRKY domain
PfamPF031063.0E-2184134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSSAEDGYCS ADSPRADSGD EPMAAAADAE ESPRAGAGQN KRERDIPSPS SPLPAAKRSR  60
RSVEKRVVSV PIGECGDRGK GASKYGQKPI KGSPYPRGYY RCSSNKGCPA RKQVERSRAD  120
PTVLLVTYTF DHNHASPQPK SGGCNQSKAS PRPKPEPVVE QAEIGPEHEA AEVPKAGPEP  180
EPEQEEKVAV TLAEQAPVTT VAPAVEEEEE SFDFGWFDQY PTWHKTALYA SAPAIDAAPL  240
LPPEEWEREL QGEDALFAGL GELPECAVVF GRRGAEWFAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-1565137679Disease resistance protein RRS1
5w3x_D2e-1565137679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462851434
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586176e-69KU058617.1 UNVERIFIED: Panicum miliaceum WRKY12-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817654.11e-126probable WRKY transcription factor 65
TrEMBLA0A0A9E6M01e-128A0A0A9E6M0_ARUDO; Uncharacterized protein
STRINGPavir.Eb03138.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-27WRKY DNA-binding protein 65