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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462851079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 296aa MW: 31726.9 Da PI: 10.3712 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.3e-15 | 117 | 161 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky 462851079 117 PWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 161 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.68 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 20.171 | 110 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.99E-18 | 111 | 167 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.2E-19 | 113 | 165 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.5E-11 | 114 | 164 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-11 | 114 | 160 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.56E-10 | 117 | 162 | No hit | No description |
Pfam | PF00249 | 2.4E-12 | 117 | 161 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MARKCSSCGN NGHNSRTCTG HRSMAESSGS VRLFGVQLHV GSSPTPMKKC FSMECLSSSA 60 PAYYAAAAAL AGASSCSPSA SSSSSLVSVD EAAEKMTNGY LSDGLMGRAQ ERKKGVPWTE 120 DEHRRFLAGL EKLGKGDWRG ISRHFVTTRT PTQVASHAQK YFLRQSSLTQ KKRRSSLFDV 180 VENGEKATSV NGRLKLREET SSMSETEFPA LSLGISRPKP EAALPPNLAL TPRCSSAMSS 240 STSPNLAPRH PSLTMMAKPP VSLQAPDLEL KISTARQTDQ AGPSPRTPFF GTIRVT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462851079 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625837.1 | 1e-125 | transcription factor MYBS3-like | ||||
Swissprot | Q7XC57 | 1e-50 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A0A9ESZ5 | 1e-162 | A0A0A9ESZ5_ARUDO; Uncharacterized protein | ||||
STRING | LPERR01G05630.1 | 1e-133 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4231 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 6e-50 | MYB_related family protein |
Publications ? help Back to Top | |||
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