PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462851070

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 102aa MW: 11208.3 Da PI: 8.4688

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462851070	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	58.7	1.1e-18	33	75	2	44
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaed 44 +Dgy+W+KYGqK +k+ + +rsY+rC +++C +kkkve +d 462851070 33 EDGYEWKKYGQKFIKNIQKTRSYFRCRHKRCGAKKKVEWHPSD 75 7*************************************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-19	21	76	IPR003657	WRKY domain
PROSITE profile	PS50811	15.847	27	75	IPR003657	WRKY domain
SuperFamily	SSF118290	6.67E-18	28	76	IPR003657	WRKY domain
SMART	SM00774	6.0E-14	32	89	IPR003657	WRKY domain
Pfam	PF03106	1.1E-16	33	75	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MASTSHPAPK CEGEESTETA AETSNGSQIV MPEDGYEWKK YGQKFIKNIQ KTRSYFRCRH 60 KRCGAKKKVE WHPSDADGDG GGTANQYELG AQYFGGGGAR SQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462851070

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU970633	1e-52	EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004986337.2	9e-38	probable WRKY transcription factor 71
TrEMBL	A0A368SIG9	2e-36	A0A368SIG9_SETIT; Uncharacterized protein
STRING	BRADI1G13207.1	1e-33	(Brachypodium distachyon)
STRING	Si038001m	1e-33	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10158	34	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	4e-12	WRKY DNA-binding protein 13