PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462850306
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 684aa    MW: 73658.8 Da    PI: 7.0077
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462850306genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26e-32302359260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  462850306 302 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSI-DGQITEVVYKGRHNHPK 359
                8****************************************.***************85 PP
2WRKY107.28e-34475533159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  462850306 475 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 533
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.606296360IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-27297360IPR003657WRKY domain
SuperFamilySSF1182901.15E-24300360IPR003657WRKY domain
SMARTSM007742.7E-34301359IPR003657WRKY domain
PfamPF031062.9E-24302358IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-38460535IPR003657WRKY domain
SuperFamilySSF1182906.93E-30467535IPR003657WRKY domain
PROSITE profilePS5081138.297470535IPR003657WRKY domain
SMARTSM007746.5E-40475534IPR003657WRKY domain
PfamPF031061.5E-26476533IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
WRRLAGEAGP DGSARCGARP RPRAGEPCLT IPAGFSPSAL LESPVLLTNF KVEPSPTTGT  60
LSMAAIINKS THPDILPSPR DKSVGNGHED GGSRDFEFKP HLNSSAQSVK KNGQDGLHGT  120
GLDAVMEEMG LCCPSVRLAV QQKRPPSVRQ DGCEQHRRSS AGLTVEQHRR HPCVAPAVEL  180
MYPPPDLARI VAEGRSRNLM SGGGENAPGI NDPKHHDTSM QNHSLSHVSS SGNLLTDTKP  240
LCSRESTHTV NGSSGPNQPV AMVGPSVNMS PEVGTSELHQ MNSSENAVHE PQPENVPEKS  300
AEDGYNWRKY GQKHVKGSEN PRSYYKCTHP NCEVKKLLER SIDGQITEVV YKGRHNHPKP  360
QPNRRLAAGA VPSSQGEERY DGVANAEDKS SNGISNLCNS VNSASMIEPV PGPASDDDID  420
AGGGRPYPGD DANEDDDLDS KRRKMESAGI DAALMGKPNR EPRVVVQTVS EVDILDDGYR  480
WRKYGQKVVK GNPNPRSYYK CTHTGCPVRK HVERASHDPK SVITTYEGKH NHEVPASRNA  540
SHEMSAAPMK TDVHPINSNM SGLGGMMRAC EARTFANQYS QAAESDTISL DLGVGISPNH  600
IDATNQMQSS VADPMQYQMQ SMAPVYNSMG LPGMPVQTAH GNAANSLYGS REEKGSEGFT  660
FKAAPLDRSS NLCYSSAGNL VMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-36302536878Probable WRKY transcription factor 4
2lex_A8e-36302536878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462850306
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958143.10.0WRKY transcription factor SUSIBA2
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A3L6E2H40.0A0A3L6E2H4_MAIZE; WRKY transcription factor SUSIBA2
STRINGSi029245m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-103WRKY family protein