PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462849969 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 470aa MW: 50580.7 Da PI: 8.5477 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.3 | 3.9e-11 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p 462849969 49 EPDCSYYMRTGLCRFGMTCKFNHPP 73 789********************97 PP | |||||||
2 | zf-CCCH | 39.3 | 1.1e-12 | 128 | 153 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ 462849969 128 GQPECQYYLKTGTCKFGATCKFHHPR 153 5799********************96 PP | |||||||
3 | zf-CCCH | 33.5 | 7e-11 | 175 | 199 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG+Ck+G +CkF+H++ 462849969 175 EKECDYYLRTGQCKFGMTCKFHHPE 199 679********************96 PP | |||||||
4 | zf-CCCH | 39.4 | 9.8e-13 | 336 | 361 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ 462849969 336 DQPECQFYMKTGDCKFGAVCKFHHPK 361 689*********************96 PP | |||||||
5 | zf-CCCH | 36.4 | 8.7e-12 | 381 | 407 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G Ck+G++CkF H++ 462849969 381 PGEPICTFYSRYGMCKFGPNCKFDHPM 407 5799*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.619 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-4 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.77 | 126 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-6 | 126 | 153 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-10 | 128 | 153 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 130 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 132 | 154 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.009 | 172 | 200 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 172 | 200 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.9E-5 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 175 | 199 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 178 | 198 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.427 | 334 | 362 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 334 | 361 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 336 | 361 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 338 | 362 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 340 | 361 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 379 | 406 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.572 | 380 | 408 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-7 | 380 | 407 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-8 | 382 | 407 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 385 | 405 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MAATTAGAGG GAGAGEGSSS SAAAAAAAIW HMNLGEAAES GPYPERVGEP DCSYYMRTGL 60 CRFGMTCKFN HPPDRKLVTS VHSSILLSGI IAVAAAQMKG EYPQRNGQPE CQAVAAAQMK 120 GEYPQRNGQP ECQYYLKTGT CKFGATCKFH HPREKAAMAN RVQWNSLGYP LRPNEKECDY 180 YLRTGQCKFG MTCKFHHPEP SNTMVAVRGS VYSPGHAATS PGQHPYQGAV TSWPLSRSGS 240 FIASPRWPGH SSYAQVIVPP GLVQLPGWNP YAAQIGSSSS DDQQRTTGGA QYYTGSRRSE 300 PTGMGDPGPG MFSPYQAGSV PAGIYSRENV FPDRPDQPEC QFYMKTGDCK FGAVCKFHHP 360 KDRTIPAPNC QLSSIGLPLR PGEPICTFYS RYGMCKFGPN CKFDHPMAAV MYGLASSPTS 420 EAPTARRMLA HVPSQSEVSP DNGSGRSRRI THSDSQQTPS GERSTEREAS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462849969 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827474.1 | 0.0 | zinc finger CCCH domain-containing protein 63 isoform X2 | ||||
Swissprot | Q2R4J4 | 0.0 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A0A9NQM2 | 0.0 | A0A0A9NQM2_ARUDO; Uncharacterized protein | ||||
STRING | OB11G20340.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-141 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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