PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462849574 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 143aa MW: 16288.2 Da PI: 7.2035 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.3e-13 | 58 | 110 | 36 | 87 |
EEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 36 ltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +tl+ g sW+v+l++ r +++r+ l+ GW +F+ +ngL++gD+++Fk+ ++ 462849574 58 VTLRM-GGPSWTVNLKHskRTRGDRTALKYGWHQFCLDNGLRVGDICIFKVLRE 110 44333.6899*****8865555556*************************7665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.644 | 46 | 138 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.0E-17 | 51 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-12 | 51 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.68E-10 | 54 | 106 | No hit | No description |
Pfam | PF02362 | 5.8E-11 | 57 | 111 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MKGSEHNVST CSVPIPWTEC FLYPGGSRNK DEQHIHPYGS CSCQHVPLAF QDAERRRVTL 60 RMGGPSWTVN LKHSKRTRGD RTALKYGWHQ FCLDNGLRVG DICIFKVLRE GDGGGEDDDY 120 DDHDDENHVL KVKVRKKDGT FLD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462849574 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985224.1 | 4e-31 | B3 domain-containing protein Os03g0212300 | ||||
Swissprot | Q10Q26 | 1e-31 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A0A9SID0 | 2e-32 | A0A0A9SID0_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A0E0CX33 | 5e-31 | A0A0E0CX33_9ORYZ; Uncharacterized protein | ||||
STRING | Pavir.Ia04671.1.p | 5e-31 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31630.1 | 5e-07 | B3 family protein |
Publications ? help Back to Top | |||
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