PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462849496

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 364aa MW: 39604.6 Da PI: 10.9976

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462849496	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8.2e-05	131	172	2	47
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47 + + erE+ Rd++N+ f eL ++l + +++s+ Ka++L A 462849496 131 KNHKAEREKLKRDQLNDLFVELSSMLDLD-RQNSG---KASVLGDA 172 677899*******************9886.24444...45555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.3E-7	127	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-10	127	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.785	129	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0098	135	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MCRGTAAWVT QVFGWVAATR SLRVLAALLF PFPLASSLPL PRTTLRSRLL LASFLPANSP 60 RLFPAPPPGA ARSPVRKTGR EPRSAGTEEN NLGMVADTES SDSLPGSSNA TADKPINGPP 120 DQRSQERNPK KNHKAEREKL KRDQLNDLFV ELSSMLDLDR QNSGKASVLG DAARVLRDLI 180 TQVESLRKEQ SALLAERQYV SSEKKELLEE NTTIKARISE LKNELHTRMG NNSINLSSLG 240 MSHQMANATN PGLATQPMQH QIWSSIPNLS SVAMTHSTNT ASPLHSRQHG PAASQVHASR 300 PQELQLFPGT SSSPKRECSQ LRSAPASTPS LTDSLPGRLQ LSLPQSSQEG SSSVPRSRRE 360 RKNG

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MCRGTAAWVT QVFGWVAATR SLRVLAALLF PFPLASSLPL PRTTLRSRLL LASFLPANSP  60
RLFPAPPPGA ARSPVRKTGR EPRSAGTEEN NLGMVADTES SDSLPGSSNA TADKPINGPP  120
DQRSQERNPK KNHKAEREKL KRDQLNDLFV ELSSMLDLDR QNSGKASVLG DAARVLRDLI  180
TQVESLRKEQ SALLAERQYV SSEKKELLEE NTTIKARISE LKNELHTRMG NNSINLSSLG  240
MSHQMANATN PGLATQPMQH QIWSSIPNLS SVAMTHSTNT ASPLHSRQHG PAASQVHASR  300
PQELQLFPGT SSSPKRECSQ LRSAPASTPS LTDSLPGRLQ LSLPQSSQEG SSSVPRSRRE  360
RKNG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462849496

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826529.1	1e-122	transcription factor BHLH062-like isoform X1
TrEMBL	A0A0A9CGL0	1e-133	A0A0A9CGL0_ARUDO; Uncharacterized protein
STRING	Pavir.Ha00418.1.p	1e-123	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12959	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-32	bHLH family protein