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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462849005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 791aa MW: 86735.8 Da PI: 6.1069 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ ++r++L +++ +++ +q+kvWFqNrR ++k+ 462849005 27 KYVRYTPEQVEALERVYAECPKPTSARRQQLLRECpiltNIEPKQIKVWFQNRRCRDKQ 85 5678****************************************************996 PP | |||||||
2 | START | 151.2 | 8.7e-48 | 167 | 374 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 +aee+++e+v+ka+ ++ Wv+++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ + g g+++l +++++ 462849005 167 IAEETLTEFVSKATGTAIDWVQMPGMKPGPDSFDIVSISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGngGTIELVYMQMY 265 789*******************************************************9999999999.****************9999*********** PP TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195 a+++lvp +df+++Ry+ ++++g++v++++S++ + +++vRae+lpSg+l++p+++g+s v++v+h l++++++++lr+l++s+++ ++k+ 462849005 266 APTTLVPaQDFWTLRYTTTMEDGSLVVCERSLSGSGGGQGaasPQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLCLEAWSVPEVLRPLYESSRVVAQKM 365 *********************************8877776665678****************************************************** PP HHHHTXXXX CS START 196 wvatlqrqc 204 ++a+l++ + 462849005 366 TTAALRHIR 374 *****9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-19 | 7 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.451 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-16 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-16 | 27 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.57E-17 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 3.8E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 4.63E-6 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 24.775 | 157 | 385 | IPR002913 | START domain |
CDD | cd08875 | 1.83E-70 | 161 | 377 | No hit | No description |
SMART | SM00234 | 4.4E-34 | 166 | 376 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-16 | 166 | 348 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.43E-32 | 166 | 378 | No hit | No description |
Pfam | PF01852 | 1.6E-45 | 167 | 374 | IPR002913 | START domain |
Pfam | PF08670 | 4.9E-13 | 743 | 790 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 791 aa Download sequence Send to blast |
MAAAVAMRSG SSDGGGGYDK GGVDSGKYVR YTPEQVEALE RVYAECPKPT SARRQQLLRE 60 CPILTNIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLS AMNKLLMEEN ERLQKQVSQL 120 VHENAYMKQQ LQNVQNPSLA NDTSCESNVA TPVNLRDASN PSGLLSIAEE TLTEFVSKAT 180 GTAIDWVQMP GMKPGPDSFD IVSISHGCRG VAARACGLVN LEPTKIVEIL KDRPSWFRDC 240 RSLEVFTMLP AGNGGTIELV YMQMYAPTTL VPAQDFWTLR YTTTMEDGSL VVCERSLSGS 300 GGGQGAASPQ QFVRAEMLPS GYLVRPCEGG GSIVHIVDHL CLEAWSVPEV LRPLYESSRV 360 VAQKMTTAAL RHIRQIAQET SGEVVYALGR QPAVLRTFSQ RLSRGFNDAI SGFHDDGWSV 420 FGGDGAEDVI IACNTKMIRN NHNAASAFGA PGGIICAKAS MLLQGVPPAE LIRLLREHRS 480 EWADYNFDAY SASALKACPG SLPGLRPMRF SGNQIILPLA HTVENEEVLE IVRLEGQALT 540 HEDGFLSRDI HLLQLCTGTE EKSMGSCFQL VFAPIDELFP DDAPLISSGF RVIPLGIKTD 600 GVPSGRTLDL ASSLEVGSAT QQTSADASQD DCNLRSVLTI AFQFPYEIHL QDSVVTMARQ 660 YVRSIVSAVQ RVSITISPSR SGLNTGNKII SGFPEAATLV RWICQSYQYH LGLELVPHSD 720 EVGEALLRMF WDHQDAILCC SFKGYVYLPA GVCLSGMGRQ VSFEQAVVWK VLGEDTTVHC 780 LGFCFVNWSF V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462849005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796396.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Refseq | XP_025796397.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A2T7C5J0 | 0.0 | A0A2T7C5J0_9POAL; Uncharacterized protein | ||||
STRING | Sb01g019120.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |