PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 791aa    MW: 86735.8 Da    PI: 6.1069
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849005genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-182785357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le++++++++p+ ++r++L +++    +++ +q+kvWFqNrR ++k+
  462849005 27 KYVRYTPEQVEALERVYAECPKPTSARRQQLLRECpiltNIEPKQIKVWFQNRRCRDKQ 85
               5678****************************************************996 PP

2START151.28.7e-481673742204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+v+ka+ ++  Wv+++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+   +  g  g+++l +++++
  462849005 167 IAEETLTEFVSKATGTAIDWVQMPGMKPGPDSFDIVSISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGngGTIELVYMQMY 265
                789*******************************************************9999999999.****************9999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++lvp +df+++Ry+ ++++g++v++++S++     +     +++vRae+lpSg+l++p+++g+s v++v+h  l++++++++lr+l++s+++ ++k+
  462849005 266 APTTLVPaQDFWTLRYTTTMEDGSLVVCERSLSGSGGGQGaasPQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLCLEAWSVPEVLRPLYESSRVVAQKM 365
                *********************************8877776665678****************************************************** PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                ++a+l++ +
  462849005 366 TTAALRHIR 374
                *****9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-19785IPR009057Homeodomain-like
PROSITE profilePS5007115.4512286IPR001356Homeobox domain
SMARTSM003891.8E-162490IPR001356Homeobox domain
SuperFamilySSF466891.45E-162788IPR009057Homeodomain-like
CDDcd000862.57E-172787No hitNo description
PfamPF000463.8E-162885IPR001356Homeobox domain
CDDcd146864.63E-679118No hitNo description
PROSITE profilePS5084824.775157385IPR002913START domain
CDDcd088751.83E-70161377No hitNo description
SMARTSM002344.4E-34166376IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-16166348IPR023393START-like domain
SuperFamilySSF559613.43E-32166378No hitNo description
PfamPF018521.6E-45167374IPR002913START domain
PfamPF086704.9E-13743790IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MAAAVAMRSG SSDGGGGYDK GGVDSGKYVR YTPEQVEALE RVYAECPKPT SARRQQLLRE  60
CPILTNIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLS AMNKLLMEEN ERLQKQVSQL  120
VHENAYMKQQ LQNVQNPSLA NDTSCESNVA TPVNLRDASN PSGLLSIAEE TLTEFVSKAT  180
GTAIDWVQMP GMKPGPDSFD IVSISHGCRG VAARACGLVN LEPTKIVEIL KDRPSWFRDC  240
RSLEVFTMLP AGNGGTIELV YMQMYAPTTL VPAQDFWTLR YTTTMEDGSL VVCERSLSGS  300
GGGQGAASPQ QFVRAEMLPS GYLVRPCEGG GSIVHIVDHL CLEAWSVPEV LRPLYESSRV  360
VAQKMTTAAL RHIRQIAQET SGEVVYALGR QPAVLRTFSQ RLSRGFNDAI SGFHDDGWSV  420
FGGDGAEDVI IACNTKMIRN NHNAASAFGA PGGIICAKAS MLLQGVPPAE LIRLLREHRS  480
EWADYNFDAY SASALKACPG SLPGLRPMRF SGNQIILPLA HTVENEEVLE IVRLEGQALT  540
HEDGFLSRDI HLLQLCTGTE EKSMGSCFQL VFAPIDELFP DDAPLISSGF RVIPLGIKTD  600
GVPSGRTLDL ASSLEVGSAT QQTSADASQD DCNLRSVLTI AFQFPYEIHL QDSVVTMARQ  660
YVRSIVSAVQ RVSITISPSR SGLNTGNKII SGFPEAATLV RWICQSYQYH LGLELVPHSD  720
EVGEALLRMF WDHQDAILCC SFKGYVYLPA GVCLSGMGRQ VSFEQAVVWK VLGEDTTVHC  780
LGFCFVNWSF V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796396.10.0homeobox-leucine zipper protein HOX9
RefseqXP_025796397.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A2T7C5J00.0A0A2T7C5J0_9POAL; Uncharacterized protein
STRINGSb01g019120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein