PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462848916 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | YABBY | ||||||||
Protein Properties | Length: 197aa MW: 21903.9 Da PI: 9.0039 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 229.6 | 7.9e-71 | 6 | 168 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103 +++vCyv+CnfCnt+lavsvP++s++++vtvrCGhC++llsvnl+ + q l+ ++ l+e+++++ ++ + ++++ + ++ s++ + ++ + 462848916 6 APADHVCYVHCNFCNTVLAVSVPTNSVLTIVTVRCGHCANLLSVNLRGLMmQSLPEQDPLQENIRPHGVNG--TPRDQFGHFEFGSS--SSKFRLPMMYS 101 5789******************************************98764899**********9995543..33444554444444..44444555666 PP YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++++++ + rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+i fgl 462848916 102 AQNDHLQEQALAARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIQFGL 168 666666666779*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-70 | 7 | 168 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.36E-8 | 113 | 162 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.1E-5 | 115 | 162 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSAQIAPADH VCYVHCNFCN TVLAVSVPTN SVLTIVTVRC GHCANLLSVN LRGLMMQSLP 60 EQDPLQENIR PHGVNGTPRD QFGHFEFGSS SSKFRLPMMY SAQNDHLQEQ ALAARPPEKR 120 QRVPSAYNRF IKEEIRRIKA NNPDISHREA FSTAAKNWAH YPNIQFGLSP GREGGKKLVD 180 ETVAAVTSAP TKIQGFY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462848916 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804908.1 | 1e-112 | protein YABBY 6-like isoform X2 | ||||
Swissprot | Q2QM17 | 3e-94 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | A0A0A8Y151 | 1e-120 | A0A0A8Y151_ARUDO; Uncharacterized protein | ||||
STRING | Sb08g022030.1 | 1e-110 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-57 | YABBY family protein |