PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462848892

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HSF

Protein Properties

Length: 480aa MW: 53272.2 Da PI: 5.3445

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462848892	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.4	2.3e-33	21	112	2	101
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+ye+++d++++ ++sws ++ s+vv+++ efa ++Lp+yFkhsnf+SF+RQLn+YgF+k++ e+ weF+++ F kg+k+ll++i 462848892 21 FLLKTYEMVDDPSTDAVVSWSdASDASIVVWNSPEFAARLLPTYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFANEFFVKGQKHLLKNI 108 9******************66679************************************999.........*************** PP XXXX CS HSF_DNA-bind 98 krkk 101 +r+k 462848892 109 HRRK 112 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.18E-32	17	111	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.9E-35	17	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.4E-57	17	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.7E-29	21	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.5E-19	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.5E-19	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.5E-19	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MAAGARGAAA GGGGGGGPAP FLLKTYEMVD DPSTDAVVSW SDASDASIVV WNSPEFAARL 60 LPTYFKHSNF SSFIRQLNTY GFRKIDPERW EFANEFFVKG QKHLLKNIHR RKPIHSHSHH 120 PGALPDNERA LFEDEIDRLS REKATLQADL WKFNQQQSGA TIQIEDLERR VLDMEQRQVK 180 MLNFLQQASK NPQFVNKLVK MAETSPIFAD AYHKRRRLPG LDYGTDSTET TSFYDDHSST 240 SKHEIGNLLN QHFSDKLKLG LCPAMAESNR TQSSHEDNGS PHGKLPDCDR VGMECLPLVP 300 QMMELSDTGT SICPSKSACF TTAVIDEGLL PCQLSLTLAS CSMDADRSQT SNANGRSIDQ 360 DQGIDNPLDA ATTATMEKDD GISRRHDDSH QRAPIDAGTS AGAMTPQGNA QVASEAPPAP 420 PAVVNDKFWE QFLTERPGCS ETEEASSTLR REPSREQIED NRQPYRDTMN DRTDMQQLKL

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MAAGARGAAA GGGGGGGPAP FLLKTYEMVD DPSTDAVVSW SDASDASIVV WNSPEFAARL  60
LPTYFKHSNF SSFIRQLNTY GFRKIDPERW EFANEFFVKG QKHLLKNIHR RKPIHSHSHH  120
PGALPDNERA LFEDEIDRLS REKATLQADL WKFNQQQSGA TIQIEDLERR VLDMEQRQVK  180
MLNFLQQASK NPQFVNKLVK MAETSPIFAD AYHKRRRLPG LDYGTDSTET TSFYDDHSST  240
SKHEIGNLLN QHFSDKLKLG LCPAMAESNR TQSSHEDNGS PHGKLPDCDR VGMECLPLVP  300
QMMELSDTGT SICPSKSACF TTAVIDEGLL PCQLSLTLAS CSMDADRSQT SNANGRSIDQ  360
DQGIDNPLDA ATTATMEKDD GISRRHDDSH QRAPIDAGTS AGAMTPQGNA QVASEAPPAP  420
PAVVNDKFWE QFLTERPGCS ETEEASSTLR REPSREQIED NRQPYRDTMN DRTDMQQLKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-21	12	111	17	129	Heat shock factor protein 1
5d5v_B	3e-21	12	111	17	129	Heat shock factor protein 1
5d5v_D	3e-21	12	111	17	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	217	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462848892

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952518.1	0.0	heat stress transcription factor A-5
Swissprot	Q6K6S5	0.0	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	A0A0E0K007	0.0	A0A0E0K007_ORYPU; Uncharacterized protein
STRING	OPUNC02G15430.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-107	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]