PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462848738

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

STAT

Protein Properties

Length: 441aa MW: 49013.8 Da PI: 7.0296

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462848738	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	189.8	3.1e-59	25	143	1	119
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfle 99 l++vl++a+g+pv kd+evvasL+yad+g++veks dd+e+pLLi+++G+e+++ +rp++++rGra+fklkisqLsskcdn+Lfri+f++p++k+ypf+e 462848738 25 LELVLIDAFGEPV-KDIEVVASLVYADNGTLVEKSrDDSEPPLLITCEGIEYPAISRPIPVIRGRALFKLKISQLSSKCDNKLFRIHFSTPHMKRYPFME 123 799*******9.*****************9************************************************************ PP STAT 100 avskpirCisrsrntrsssl 119 a+skpirCisr r++r++++ 462848738 124 AYSKPIRCISRHRTNRPLGS 143 *************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.505.10	7.3E-5	334	417	IPR000980	SH2 domain
SuperFamily	SSF55550	1.88E-9	337	421	IPR000980	SH2 domain
PROSITE profile	PS50001	10.33	343	441	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MVLKIVYPNN GNILIQPSCR RNFLLELVLI DAFGEPVKDI EVVASLVYAD NGTLVEKSRD 60 DSEPPLLITC EGIEYPAISR PIPVIRGRAL FKLKISQLSS KCDNKLFRIH FSTPHMKRYP 120 FMEAYSKPIR CISRHRTNRP LGSGKQVTSA TTDEIIVLSD GQGFVNADTV IGRLNSHGQS 180 SVGCSHPSMN VKTEDGVAMT VDTNKMVSQN KHARKVVVSK EAHNVMGTDS STSDYESFEA 240 GSSWSGSDGD EVESFSDAVI FRYCLDSTDE RSKFLRGAAP TVNKDALVKL ADQDLEVLRG 300 IAGCGDDIGR NEFERLWYWL YPVATSLSTD KIKNLWDCTV PRWIEGLITR VEAENALRSS 360 KGLLKEPGTF ILRFPTTRSW PHPDAGSLVV TYVGFDNLIH HRLLSLDSSD ARAGSLPDLL 420 LQEPELCRLG RVERLPTAKQ R

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MVLKIVYPNN GNILIQPSCR RNFLLELVLI DAFGEPVKDI EVVASLVYAD NGTLVEKSRD  60
DSEPPLLITC EGIEYPAISR PIPVIRGRAL FKLKISQLSS KCDNKLFRIH FSTPHMKRYP  120
FMEAYSKPIR CISRHRTNRP LGSGKQVTSA TTDEIIVLSD GQGFVNADTV IGRLNSHGQS  180
SVGCSHPSMN VKTEDGVAMT VDTNKMVSQN KHARKVVVSK EAHNVMGTDS STSDYESFEA  240
GSSWSGSDGD EVESFSDAVI FRYCLDSTDE RSKFLRGAAP TVNKDALVKL ADQDLEVLRG  300
IAGCGDDIGR NEFERLWYWL YPVATSLSTD KIKNLWDCTV PRWIEGLITR VEAENALRSS  360
KGLLKEPGTF ILRFPTTRSW PHPDAGSLVV TYVGFDNLIH HRLLSLDSSD ARAGSLPDLL  420
LQEPELCRLG RVERLPTAKQ R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462848738

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983605.1	0.0	SH2 domain-containing protein B isoform X2
TrEMBL	A0A368SMT1	0.0	A0A368SMT1_SETIT; Uncharacterized protein
STRING	Si034463m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7547	31	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	4e-83	SH2 domain protein B