PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462848597 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 481aa MW: 52819.2 Da PI: 8.8133 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.2 | 1.1e-12 | 34 | 59 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ 462848597 34 GQPECQYYLKTGTCKFGATCKFHHPR 59 5799********************96 PP | |||||||
2 | zf-CCCH | 33.5 | 7.2e-11 | 81 | 105 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG+Ck+G +CkF+H++ 462848597 81 EKECDYYLRTGQCKFGMTCKFHHPE 105 679********************96 PP | |||||||
3 | zf-CCCH | 39.4 | 1e-12 | 240 | 265 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ 462848597 240 DQPECQFYMKTGDCKFGAVCKFHHPK 265 689*********************96 PP | |||||||
4 | zf-CCCH | 39.4 | 1e-12 | 347 | 372 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ 462848597 347 DQPECQFYMKTGDCKFGAVCKFHHPK 372 689*********************96 PP | |||||||
5 | zf-CCCH | 36.4 | 9e-12 | 392 | 418 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G Ck+G++CkF H++ 462848597 392 PGEPICTFYSRYGMCKFGPNCKFDHPM 418 5799*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.9E-6 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.77 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-10 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 36 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-5 | 38 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.9E-5 | 78 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.009 | 78 | 106 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 78 | 106 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 81 | 105 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 84 | 104 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 238 | 265 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.427 | 238 | 266 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 240 | 265 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 242 | 266 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 244 | 265 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.427 | 345 | 373 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 347 | 372 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 349 | 373 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 351 | 372 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 390 | 417 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-7 | 391 | 418 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.572 | 391 | 419 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-8 | 393 | 418 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 396 | 416 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MLAFGMTCKF NHPPDRKLAV AAAQMKGEYP QRNGQPECQY YLKTGTCKFG ATCKFHHPRE 60 KAGMANRVQW NSLGYPLRPN EKECDYYLRT GQCKFGMTCK FHHPEPSNTM VAVRGSVYSP 120 GHAATSPGQH PYQGAVTSWP LSRSGSFIAS PRWPGHSSYA QVIVPPGLVQ LPGWNPYAAQ 180 ISSSSSEDQQ RTTGGAQYYT RRSETTGMGD PGPGMFTSYQ AGSVPAGPYS RENVFPDRPD 240 QPECQFYMKT GDCKFGAVCK FHHPKDRTIP APNCQLSSIG LPLRPAQISS SSSEDQQRTT 300 GGAQYYTRRS ETTGMGDPGP GMFTSYQAGS VPAGPYSREN VFPDRPDQPE CQFYMKTGDC 360 KFGAVCKFHH PKDRTIPAPN CQLSSIGLPL RPGEPICTFY SRYGMCKFGP NCKFDHPMAA 420 VMYGLASSPT SEAPMSRRML AHVPSQSEVS PDNGSGRSRR ITHSDSQQTP PGERSTEREA 480 S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462848597 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662931.1 | 1e-174 | PREDICTED: zinc finger CCCH domain-containing protein 63 | ||||
Swissprot | Q2R4J4 | 1e-174 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A0D9XRZ1 | 1e-173 | A0A0D9XRZ1_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA11G0112800.1 | 1e-173 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-104 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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