PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848594
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 428aa    MW: 47476.9 Da    PI: 4.3878
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848594genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like40.84.8e-131011302555
    G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                ++A+Pk+i+e+m+v+gLt+ehv+SHLQ YRl
  462848594 101 KEAVPKKIVEMMNVEGLTREHVASHLQ-YRL 130
                78************************9.786 PP
2Response_reg60.49.8e-2112103189
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT.HHHHHHH CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahge.eedalea 89 
                   vl vdD+ + ++l+++ l++ +y +v+++ ++e ale+l+e++    +Dl+++D+ mpgmdG++ll+ i  e  ++p+i+++a+++ e++++ea
     462848594  12 VLAVDDDYVSLMLIEKQLRRCRY-NVTTVMHAETALEMLRERRdanqFDLVITDVHMPGMDGFKLLELISLEM-DIPVIMLSANDTlEAMMKEA 103
                   799********************.***************99888999**********************8765.9*********9966666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-24998No hitNo description
SuperFamilySSF521725.27E-249100IPR011006CheY-like superfamily
SMARTSM004484.1E-1510112IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.07711121IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-1712103IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.88E-211399No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1299135IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-10101127IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDVDEFRAKL QVLAVDDDYV SLMLIEKQLR RCRYNVTTVM HAETALEMLR ERRDANQFDL  60
VITDVHMPGM DGFKLLELIS LEMDIPVIML SANDTLEAMM KEAVPKKIVE MMNVEGLTRE  120
HVASHLQYRL YLKKLSTGTY RSRDPFTDET VWSEGNSINT HELGTFQDNL EHGRYQPSIS  180
FVGSSNSSNP FARMISPAVF GTHNTLPTQL MNQSNLSIPL KDSGSVGYGT SSNSSANIQR  240
GSPSLAASME ATYYPYRSYA SLCMSDPDPS DGNRRKINRL SRLAASSGQN SEFQNQMAAL  300
TRTTNPMAGF IEQVAPLNIG SNTKSTVMPT YNSTPDGASS VMSDLPSIQM YNDVMQSQML  360
NGEDGNGSLL DHQAVADQLN NNNESLIATS SGQNGLSDDF DDFFSDYLNE DVFKNIDAFM  420
DGDCEFTT
Cis-element ? help Back to Top
SourceLink
PlantRegMap462848594
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305574.11e-48two-component response regulator ORR25
TrEMBLA0A3L6PDP72e-42A0A3L6PDP7_PANMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1872246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-30response regulator 12